NONHSAT023862

From LncRNAWiki
Revision as of 06:09, 13 October 2014 by 73.162.128.239 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT023862

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1663 nt

Genomic location

chr11-:101636666..101640692

Exon number

2

Exons

101636666..101637899,101640264..101640692

Genome context

Sequence
000001 AAACAGTACT ACTATCATTT CTTGGGAGGA GCTTGAAGAA GTAAAATAAG TGTTTAGTAG AATGGATATT CACAATAGTG 000080
000081 GGTAAGTCCG TGACTATGAA CTTCAAGACC TATTTAAGGT TAAGCAAGCC TTCCTATGCC TGGCTACAAG GTATAAGAGA 000160
000161 AAATTCTAGC AGTTGCTGAC AACAACCAAG ATGGCAAAAT CAGTTTGAAA AATTTGTGTT ACTGATGCAA TAATTAAAAA 000240
000241 GGAAAGACTG TAGTCTTATA CATGAAGCAT CTTATACCCA TGAACCTCAA TGATGGCAGT ATCTTCAAGT TACTTGCAGA 000320
000321 TCTCATCCTT CTTTGCAAAA TGATCAATTT ATTTGAACCA GATACAACTG ATGAAAGAGC CATTAATAAA AAGCTCGCCG 000400
000401 CTTTCACTCT TTCTGAAAAT TTAAACCTAA CCCAAAGTCT GTCTCGACCA TTAGTTGTAC AGTGGTCAAC ATCAGTGCAC 000480
000481 AGAATCTCAA AGAAGGAAAA CCTCACTTGG TCTTAGGACT TCTCTGGCAG ATCATCTAAG TTGGTCTTTT TGATGATATT 000560
000561 GAGATTTCta ggaatgaagc tctgattgca ttgctaaatg aaggtgagga actagagatg ctgatgtagc tttctcctga 000640
000641 ggaattactg ctgtaatggg TGAATCATCA TCTGGCTGAT GCAGGATGGT GTACCATCAA CAACTTCAGC CAAGGCAGTA 000720
000721 AGGATTCAAG AGCCTATTTT CATCTGCTTA CACAAATTGA CCCTAAAGGT GACTGGGAAT ATGGACTTTT CAGTCCATCT 000800
000801 TCAGGATTTC ATAAGAAAAA TGATTTGAAG TGTGCTGGAC TTATGCTTCA AGAAGTAGAT AAACTTGGCT GCAGTTTGTT 000880
000881 ACTCCTGCAG ATGTGGTTTC AGGCCATCCT AAACTTAATT TAGCTTTCAT AGTTAATCTG TTTAATATCT ATCCATGCCT 000960
000961 ACACAAGTTA GATAATAATG ACATCAATAT AAACTTATTG GAGGGAGAGA GCAAAGAAGA GAGGACATTT CAGAACTGGT 001040
001041 GCATTCCTTA GGAATCAACC CATATATTAA TCATTTGTAG TTACCTTGCA GATGCTTTAG CAATCTTTCA GCTCTATGAT 001120
001121 ACAATCTGAG TGTCAGTCAA CTGGAGCCAT GTCAACAAAC CTCCTTATCC TGCCCTTGGA GGGAACATAA ACATTGATAA 001200
001201 CTAACTATAC AGTGGAACTT GGGAAGAATA AGGCCAAATT CTTCTTCGTT GGCATTGCTG GGCAGGACCT AAATGAAGGG 001280
001281 AATTCAACAT TTATTCTGGC ATTGGTTATG GCAGCTGATG AGAGGGTACA CACTGAATAT GAACAAAACC AAATTCTCCT 001360
001361 TCGTTGGCAT TGCTTGGCAG GACCTAAATG AAGAGAATTC AACATTTATT CTGGCATTGG TTATGGCAGC TGATGAGAAG 001440
001441 GTACACATTG AATATGTTAT CAGATCTTGG AAAGGTTGAA AGTGCACTTT TAAAAGTACA AATAAAAATA CTTTTATTTC 001520
001521 CAGCTTCAAG ATATGCCACT TCAGTTGGTT GTGAGATCAG TGCCCAGATA TATGCATTGC GTGTTGACCT TGTGGAAGCG 001600
001601 AAACCAAAAA TGGTTATGTC AGTGTTTTCT TGTTTAATGG GAAAAGGACT GAACAGAATA AAA
[back to top]

Predicted Small Protein

Name NONHSAT023862_smProtein_1532:1636
Length 35
Molecular weight 4190.1462
Aromaticity 0.117647058824
Instability index 91.0823529412
Isoelectric point 9.89398193359
Runs 6
Runs residual 0.00967982129561
Runs probability 0.00930342106813
Amino acid sequence MPLQLVVRSVPRYMHCVLTLWKRNQKWLCQCFLV
Secondary structure LLEEEEEELLLHHHHHHHHHHHHHHHHHHHHEEL
PRMN -
PiMo -