NONHSAT024276
Revision as of 06:20, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT024276 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3018 nt |
Genomic location |
chr11+:114177431..114180451 |
Exon number |
1 |
Exons |
114177431..114180451 |
Genome context |
|
Sequence |
000001 TTTCTGTTTT GGTACCAGTA CCATGCTGTT TTGGTTACTG TAGCCTTGTA GTACAGTTTG AAGTCAGGTA GTGTGCTCCT 000080
000081 CTTAACCTCA GCATACCTGA CAGAAGAAAG CTTAGGCCCC TGTCGAGGTG GCAGTTCTCT GAGGTAAATG CTCTCTGTGC 000160 000161 AAAGACCTCC ATTTCTATTT AAAAAGATGT TTGTATGTTG TCCAAAAATA GACACAGTTG TGCCAAATGT GTTCCACAAA 000240 000241 CTAGTGAACC ACTTCTATTC CAAAGCATCT CTGGACTTTC ACAGCTTGCA AAAGGATATT GATAAGCTTT TTCAAAACCA 000320 000321 GGATCTTGAT GATCATGATG ATTGTTTCAG TGATACCTAG GAAACATTCC CGCCTTTTAC AAGGATGCCT CTCTCTTAAA 000400 000401 TAGGTGCTCT TGCCACCTTA TCTCCCCAGG AAAATTCACA GGGCAGGTTA AGAAACCTTC AACTAGCTAT TTCCTCAATT 000480 000481 GTAAACATTT CTACTCACAG GTCTCAGAGC ACTTCAAACT CAGTGTGTCC AAAACAGAGC TACCATCTGC TCCAGATCTG 000560 000561 CTTTATTTCT GGTATTCTTA GCTCCTTGAA TGGCACCATC ATATAATAAA TTGGACAAGC CAGAACCTGG AAGTCAATTT 000640 000641 GTCCTTTCCC TCTCTGTCAT GTTCCATATC TAACTTAACA TCAAGCTCTG TCCATTTTAC TTCCTGACTT CCTCTGTAAC 000720 000721 CCATTTCTTC CCGTGTTTAC CATCACCTGG TCTCAGCTAC CCCTGTCTCC CTCCTGACTG GCCTCCCACT TCCACTCTTG 000800 000801 CCCCTCCACT CAATTCTTCT CTGTTCTGCA GCCCAAGTGA CCCTCTCAAA ATGTAAATCT GATCATGTCA CTCTCCTCCT 000880 000881 TAGTGCTCCC TAGTGACTCT CCAGAGCTTT TGGAATGAAA AGCAAAATTC CTGTCATGGT CCACAAAGCC CTGCCTAGTC 000960 000961 TGGCTCCTGC CAACCTATTT CCCCACAATC CAGCCACGTT GGCTCTCTCC TCCTGTGTTT CCTGCCACCA CGTGGCCTTT 001040 001041 GCACTTGCGG TTTCCTCTTA CTGGAATTTC CTCCCGCCCT CCCTGCTTGC TTCAGTCTGG TTAACTCCTA CGTATTTATC 001120 001121 CTCTATATCT CTGCTTGCCC GACTCCTTTT TGGAGGAGCT TTTCCTGATC CTCTAGGTCA AGGGGAGCTC CCAACATCTC 001200 001201 CCCATTAGTG CCATGCTCCT TTCCTTCCTT GCATTTGTCA GTTTTAATTT CCACTCCTAT GAGTGATCAC TGGGTTAATG 001280 001281 CTTTCTCCCG CCACCCACCC GTCTACAATC TCCATGAGGT TAGAATCTGT TTCTCATTTG TTCATCCTTG TGTCCCCAGT 001360 001361 GCCCAGCCTA TTTCCTGAAC ATAGTAGAGG TTCAAAACAT ATTTGGAAAA TACATGAATA CTCACATTTT GCTTTTCAGA 001440 001441 CTTTTCCTCC TAGAATATCA TTCACCTGAT TCGGGTGTGG GGTGTGGTCT CTGTCAAAGA TGCACTAATG ATTGTTCCTT 001520 001521 GCCCGTACAA TTCTCACAGT GACCTCCACG CTTACTTAGC CTTGATTTCC TTGACCTGTT TTGATGGTTC TTTCTCAGGA 001600 001601 GAGCCTGCAG GAACTTCTGA GGATGGGGCT TTGGGGATGT GAGGACAATG GAAAACAGCT TGTCAGGGAG ATACTGATGC 001680 001681 ACTGCCAGCC TTGCTGAGAC AGGGCAGGAG GAACCGCCTC TAAATCTCAG GATAGTTCAC CTGGAATGTG GGAAGACATT 001760 001761 CTCAGAAAGG GTTCTTCCCG GGGCCCTCCT CTTCATCCTT TCTTGCCTCC CTCCCTTCCT CCCCATACCC CTCAGGCTTT 001840 001841 TATAGATGCA TATTTACAGA GGACAGGGCT ACCTTTTTTT GCATATTGAT TCTTTTGAAA GGGCAGACCT TTAGAACTAA 001920 001921 AGAAATGACC ACACCGCTGT TAGCTTTCTG CAAAACAGCA TAGCACTTTC CCGGTGTGTG TTTATTACCT ACCCCATGAG 002000 002001 CTAAACATGA GGCAAAGTAG TAATTGGCTG GGTCTCTGGT GAGTCCATTT CCCTGCGTTG CCCCGAGGTG TATGCAGGCT 002080 002081 TTACACAGCT ACCTTGGCAA CTGACTTCCC CAATGTTTGC TGTGTGTCCA AGGACGAGCA GGGATCTATG ACACTGGGTG 002160 002161 TTTCTAGCAA ATTTCCCTCT CAAATTGGCA CATTCTCTGT GAGCTTTGGA GACTTCACAG TGTGGCTCAC AGTTTGGGAA 002240 002241 CAATTTGCAT CATCATCTGA CTGGTAAGTT CTAGTTCTGT GGTAACTCAA GTGTTTCAAA TAGCTTAATA CGCAATAGGG 002320 002321 CACGGAGGTT CGTTCTGCTT CTGTTGGAAT CAAACACACA TTTCCACAAT GTTCCCGTTA TACAGGATCA TCCCGAAACA 002400 002401 CATCCCCCAG AACACTATGT TGTCACTACT CTACCTTTTG ATATACACTT TATTATTATT CCTATGTGCA GATAGGTTAC 002480 002481 TTAAGTTTTT CTGTTCTAGA TTAGTTTGTC TATTCAAATA CATGTTTCTC ACACACTTCT ACAGTGTTTT TCTTTTTGTT 002560 002561 GTTATTCTTA AAGTGTTCTA TGAAAACTTC CATGTTGTAT CAAGGCTGGG TGGTAGCTTT GTAACTAGTT TCCCACCTTA 002640 002641 GAATGACTGT CTGCTTTGTC CAGGACTGCA AGGGGGACTT AGAATATGGG ATTTTTCAGT GCTAAAACTA GAAAAGTCTG 002720 002721 AGACAAATCA GGACAAAGTG GTCACCCTGC TACCATTTCT AGCCTTGATA AAGGAGCAGG TAGACCCAAC CAAGGATAAT 002800 002801 TTTTGTTTTC TATGTAGATA CCAGTTTAGT GGTTGGTAGG AATTCCCCCA AATCAACACC TTGCTAAGCT CATCTCTCTC 002880 002881 TCTCTCTTTT AATATAACAG CTTATTGAGA TAAAACTCAC ATACCATACA ATTAATGCAC CCATTTAAAT TGCGAAATTC 002960 002961 AGTAGTTTTT AGTATACTTT CAGAGTTGTG CAACCTTCAT CACAATCAAT TTTACAAC |
Predicted Small Protein
Name | NONHSAT024276_smProtein_914:1207 |
Length | 98 |
Molecular weight | 10319.0112 |
Aromaticity | 0.0927835051546 |
Instability index | 55.6969072165 |
Isoelectric point | 8.77288818359 |
Runs | 13 |
Runs residual | 0.00248186330661 |
Runs probability | 0.0252197899257 |
Amino acid sequence | MKSKIPVMVHKALPSLAPANLFPHNPATLALSSCVSCHHVAFALAVSSYWNFLPPSLLAS VWLTPTYLSSISLLARLLFGGAFPDPLGQGELPTSPH |
Secondary structure | LLLLLLEEHHHLLLLLLLLLLLLLLHHHHHHHHLLLHHHHHHHHHHHHHHHLLLHHHHHE EELLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLHHHH HHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooTTTT TTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiii |