ENST00000580854.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000580854.1

Source

Gencode19

Same with

lnc-LIN28B-1:2,NONHSAT114209

Classification

intergenic

Length

790 nt

Genomic location

chr6+:105585166..105616858

Exon number

5

Exons

105585166..105585353,105585645..105585798,105595151..105595255,105602269..105602366,105616614..105616858

Genome context

Sequence
000001 GCTCCCGCGA CTCCGCTGCG GGTCTGCACA CCCGAGGACT CGGTTTGAAA CGCCCGCTTA TTTATTTTCT TGTCGCCTCG 000080
000081 CTACAAGATT CTATCCTTGT TTGGGCATGA GTGGGGGGCG GCAGTCTCGT GGGACCGGCG GCATTCGTCG TTCCTCCTTA 000160
000161 CGGGGATAAT TCGAGAAGTG CGGTCCGGGG GTACTTAACC GAAACTAGCA ATCCCAGGCG GTACAAGGCC CTCCATCGTA 000240
000241 GGCAAAGCAC TACCTGAATG TAGATTTGGG CCATACGTTG GAAAATAAGA CATGAGAGTA TGCTCCGATC AACTTTTACT 000320
000321 GTTCACTGGA CAACTATTTT GGGAATTTGC AGACCTATAA AGCCCATCTA TAAATCTCAA GCATGTCCAC TTTCAGAGAA 000400
000401 GAGAAATGCT GACAACCATT TAGTCTCTGA GGACAACACT TTTAAAGTGT AACAATGTGG CATCCAGAGC TTATCCAGAT 000480
000481 GAGCGGAGAG CAAATGAATT TCCTTCTGCT CCCCTGTTGA AGAGGAGAGA AAAATTCTTC AAGCTGACTC CATCATAGGA 000560
000561 CTGGAGAGAG ATTGGATGTC AGAGTGATTG ATGTGCTCCT ACTGGAAGAA GGCAAACATC CATATGTGAA CTGCCTGTGG 000640
000641 GGTTTCCAAG GAAAGGAACG GCAGGCAGCC TCTATGAGCT TAAAGAAGAT AACTGGGACT TTAGTCCTAT AACCTCAAGG 000720
000721 AACAGTATTC TGTGAACCAT CTGAGAAGCT TGGAAGAGGA CCCCAAACTC CAAATAAGAA GCTCAGTGTG
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Predicted Small Protein

Name ENST00000580854.1_smProtein_299:451
Length 51
Molecular weight 5760.6277
Aromaticity 0.08
Instability index 55.53
Isoelectric point 9.23687744141
Runs 7
Runs residual 0.0246783625731
Runs probability 0.0190400484519
Amino acid sequence MLRSTFTVHWTTILGICRPIKPIYKSQACPLSEKRNADNHLVSEDNTFKV
Secondary structure LLLLLEEEEHHHEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEL
PRMN -
PiMo -