NONHSAT140989

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT140989

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2430 nt

Genomic location

chr16-:21443345..21445776

Exon number

1

Exons

21443345..21445776

Genome context

Sequence
000001 GCCTCATTTT TCCCGGCTCC TATTTAAGAT GGAGTTGCTC TGGTTCACAC ACCTCTGACA TGATCATTGC CCACTGCGGC 000080
000081 TTCCACCTCC CGGGTTCAAG AGATCCTCCT GCCTCACCCT CCCAAGGTGC TGGGACTACA GGTGTGTGCC ACCAGCTCAG 000160
000161 CTAATTTTTG TATTTTTTGT AGAGATGGTG TTTTTCCATG TTGCCCAGGC TGGTCTCAAA CTCCTGGGCT CAAGCAATCC 000240
000241 TTCTGTCTCA GCCTCCCAAA GTACTGGGAT TACAGGCATG TCCCACCATG CCCAGACTAA TATTTACTTT TAATCAGACT 000320
000321 AAGATAGGGT TACTACTTGA GTTGCTATGG CTCCAGCTGA AAGAAAGCCC GTGCAGTCAT ATCACGCGTA AACATTTGCT 000400
000401 TTATGCTAAA AATATGGTGG ACCTGGCATT ACAGCTATTA CAAATCTCCT AAGATGTCTC GGGTAGTGTA TTAGTTACTT 000480
000481 TTCATACTGC TATGAAGAAA TACTGGAAAC TGGGTAATTT ATAAAGAAAA AGAGGTTTAA TGTACTCACA GTTCCACAAG 000560
000561 GCTGGAGAGG CCTCAGAATC ATGGTGGAAG GCAAAGAAGG AGCAAAAAGG TATGTCTTCC ATGGCAGCAG GCAAGAGAGC 000640
000641 ACGTGCAGGG AAACTGCCCT TTATAAAACC ATCAGATTTA GTGAGATGTA TTCACTATCA CGAGAACAGT ATGGGAAAAA 000720
000721 CCTGCCCCCA TGATTCGATT ACCTCCTACC GGGTCCCTCC CACGACACAT GGGGATTATG GGAACTACAA TTCAAGATGA 000800
000801 AATTTGGGTG GGGACGCAGC CAAACCATAT CGGGTAGCAA CAACCTAGGG TCAGTTTTGC AGGTGGTAAA GCCATTTACC 000880
000881 AAGATAGTTG TAGGTAAAGA AGGGCAGATT TATTAGAGAA ATTGTGAAAA TATGTTGCAG TGGGCAGCTC AGCAGAGAAG 000960
000961 GGGCTACCTG CAAAGAGGCA AGGGCTGGAG GAAAGTTTTA TAGGGTCCTG CTGAAGGGTG CTACGTGTGG AATGAGGTCA 001040
001041 TTGTGCCCGC AGGTTGTTTG TGATTAGCTG TCTCTAACAA TTGTTCATAC AATAATTGTT CATTATTGTT CTCAACTTGG 001120
001121 GGCTCTCCCC AACCTGGGGA CCCTTCCTTA TTGTTGCTTA CTTATCAGGT CTCCACATAA AGGTGTGGAA ACTTCATTCA 001200
001201 TTCATATCTT CAACACAAAT TGTAGGTAGC CTGTTTTTTA AAACATTTAT TCAACAAATA TTTAGTCCAA GCCACTATTA 001280
001281 CTTACTACCT TCTCTACTAT TGTATGGACT TTTAACTATC TCTGACACTA TTCACTATTC TTCCACATTC TCTATTATTT 001360
001361 ATACCTATGG TAAAATTTGC CAGTTTGACC ATACAACTAA TACTCACAGG GAATATATAG AGTCTAGAAG AAAATATACA 001440
001441 GGTCCTTAAA GGCTGCCCTG CCAACAAAAC CATAACGCAG GAACAAACAT CACAACTATG CCAAATAATC AATCCTACAA 001520
001521 TGTCCAAAAT TTTACTTTAA AACTGGAATT ACCAGACTTC CTTTCTGCAT TAACCAGTTT AACTAGACAG TAACGAAATA 001600
001601 TTCCTACTTT ATGCTGTGAT AGTTTGTTTG TTTGTTTGTT TGTTTATTTA TTTATTTATT TAAGACAGAG TTTCGCTCTT 001680
001681 GTTGCCCAGG CTGGAGTGCA GTGGCACGAT CTCAGCTCAC CACAACCTCC GCCTCCCAGG TTCAAGCGAT TCTCCTGCCT 001760
001761 CAGCCTCCCG AGTAGCTGGG ATTACAGGCA TGTACCACCA CGCCCGGGTA ATTTTGTATT TTTAGTAGAG ACGGGGGGTT 001840
001841 TCTCCATGTT GGTCAGGCTG GTCTAGAACT CCAGACCTCA GGTGATACCC CTGCCTCAGC CTCCCAATGT GCTGGGATTA 001920
001921 CAGCTGTGAA GCCACCGCGC CCGGCTGCTG TGATAGTTGA GATGTAAACC AAAAATAAAA TTCTAAGCCA CCCAGTCCGA 002000
002001 CTGAATGGAC CCTTCCTGTT GAGCAAGGAC ATTCCAAAGT AAACTGAAAA GACCAGCTTA GGCCATGATG GGAAGGGGAG 002080
002081 GTGTCAACAT GCCTCATTCT ACCTTCCTCC CTCTGGAATC CAGACACAAC TGACCAGCAT TAACATTAAA ACAGAGATCT 002160
002161 TAAGCTGGGC ACAGTGGCTC ATGCCTATAA TCCCAGCACT TTGGGAGGCC AAGGTGGGAT CACCTGAGGT CAGAAGTTCA 002240
002241 AGACCAGCCT GGCCAGTATG GTGAAGCCAT GTCTCTACTA AAAATACAAA ATTAGCCGGA CATTGTGGTG CACGTCTGTC 002320
002321 ATCCCAGCAA GGCAGGCGAA TCACTTGAAC CCAGGAAGCA GAGGTTGCAG TGAGCCAGGA TCATGCCATT GCACTCCAGC 002400
002401 CTGGTCAACA GAGCGAGACT CCGCCTCATT
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Predicted Small Protein

Name NONHSAT140989_smProtein_539:799
Length 87
Molecular weight 9733.8976
Aromaticity 0.104651162791
Instability index 49.1186046512
Isoelectric point 9.65313720703
Runs 9
Runs residual 0.0349704963554
Runs probability 0.0476554986359
Amino acid sequence MYSQFHKAGEASESWWKAKKEQKGMSSMAAGKRARAGKLPFIKPSDLVRCIHYHENSMGK
TCPHDSITSYRVPPTTHGDYGNYNSR
Secondary structure LLLLLLLLLLLLHHHHHHHHHHLLLHHHHHHHHHHLLLLLLLLLLLEEEEEEEELLLLLL
LLLLLLLLEEEELLLLLLLLLLLLLL
PRMN -
PiMo -