NONHSAT141425
Revision as of 06:35, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT141425 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
980 nt |
Genomic location |
chr16-:27055711..27059762 |
Exon number |
3 |
Exons |
27055711..27055835,27056855..27056940,27058994..27059762 |
Genome context |
|
Sequence |
000001 ggagcgttta ggagtctcaa catgtaaagg gtggttggag tttcaaagag ctgagaaaga acttgacgag ggatggcaga 000080
000081 gaggtacgaa gttcaggaaa gtgatgtcgt gaagccaagg gagagagatg tgagaagaga atggcaacat gttgaaagtt 000160 000161 gcacggaggt caaataaaag ggaagacacc tccatacatt taggaaaaag ctggaggcag aaacgagact gtagtgcgtt 000240 000241 ggagagtgaa tgggagagag atgaacatag tgtatatgct ggcctaagaa aggcaagcaa gagattgggc aggacccaga 000320 000321 ggagatgttg gattgtggga gGTgtctgca ttccttcaaa agcagacctt gaaacagaat tgagtgcaag tggtttattt 000400 000401 tggagatgat cccaggaaac accaatatgg gtggcgggtg aagaaaggag acatcagtaa agaatatttc agcaagcaag 000480 000481 atgaatgtgg gaatatggag cttaacttta ttgggtaacc ctggaagaca gtatggactg tgtattcaaa gttaattccc 000560 000561 cattaacttt ggggagctgg gatatattta tccaccaatt ttagtcattg gttgagcttc cgttccttgg ggattgggga 000640 000641 agcattaatt tcccaggcac ctttagcagg ccatgtgcat ggggaaagga ggctctggca gccagataaa gtcctcacgt 000720 000721 aaaaagacag gagatggcag ttggaagttg gatgaaagtg atgaaaatga cactgaagaa tgagctgtag aaggaacaga 000800 000801 gagttagaag ctagaaaagt acatggagaa ccatacaact gtggtgtcat aaaagACTTA TCTTCTGCTG TGTTACCCTG 000880 000881 GTTGACTCCA GTTTGGCTTC TACTCCATGG AAGAGGTTTT ACATTTCATC TGGCCCTGTG AATGTGGACT CCGTTTCTCC 000960 000961 CCTCCCTGTG CTGACATTTC |
Predicted Small Protein
Name | NONHSAT141425_smProtein_779:940 |
Length | 54 |
Molecular weight | 6089.0875 |
Aromaticity | 0.0943396226415 |
Instability index | 47.6811320755 |
Isoelectric point | 9.38067626953 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0700896975407 |
Amino acid sequence | MSCRRNRELEARKVHGEPYNCGVIKDLSSAVLPWLTPVWLLLHGRGFTFHLAL |
Secondary structure | LLLLLLHHHHHHHHLLLLLLLEEELLLLLLLLLLLLHHHHHHLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooo |