NONHSAT143057
Revision as of 07:17, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143057 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
832 nt |
Genomic location |
chr16+:66975890..66977282 |
Exon number |
2 |
Exons |
66975890..66976640,66977202..66977282 |
Genome context |
|
Sequence |
000001 GTCACCTCAG AGCCTCGCCT TTGCTCCCCC TTCCTGTGCC ATCCCCAAGC CCGAGACCAC CTCCTCCCTG CCCCTGGCAT 000080
000081 CCAGTCTAAC CTGCCTCTTC CTGATCCACC TGGGGTAGAT GTTGCCTCCT ACATTTGGTG ACCTGCTGAG GGAGGAGTAC 000160 000161 ATTGGGGACA ATGGGGATCC CCAGACCCTC CAAGCGCAGT TCCAGGAGAT GATGGCGGAC TCCATGTTTG TGATCCCTGC 000240 000241 ACTCCAAGTA GCACATTTTC AGTGTGAGTA TATTTGGACC AAAGCCTGGC GGGCAGGGTA CAGCTCAGGG CTGTGGGTCC 000320 000321 CAGGTGAGAC CTGCTGCTGT CCGGGTCagc actcatgttt attgggctcc ggggacactt gacatccatc attgcagtaa 000400 000401 atcctcatgg ctagcccaag aatccgacat ttcccccatt tcacagacga gcaaattgaa gttagggacc ttcagtgact 000480 000481 tgcccaagat gacacagcaa agaaTCGCAA GTCCTTTCCT CTATTCCTGC CCCAGCCTGG GGCTCCACAC CCCATTGTCC 000560 000561 AGATTCCAGC CAGCTTTGGA CCTAGGTATC TTATCACCAT GGGTGAGGCA AGAAGTCTTC AGGGGGAGGG GCCACCGTGT 000640 000641 CATGGGCTGT CCACCCCACA GGTTCCCGGG CCCCTGTGTA CTTCTACGAG TTCCAGCATC AGCCCAGCTG GCTCAAGAAC 000720 000721 ATCAGGCCAC CGCACATGAA GGCAGACCAT GTTAAATTCA CTGAGGAAGA GGAGCAGCTA AGCAGGAAGA TGATGAAGTA 000800 000801 CTGGGCCAAC TTTGCGAGAA ATGGGTGAGA CA |
Predicted Small Protein
Name | NONHSAT143057_smProtein_488:754 |
Length | 89 |
Molecular weight | 9766.2521 |
Aromaticity | 0.0681818181818 |
Instability index | 52.3534090909 |
Isoelectric point | 9.86138916016 |
Runs | 13 |
Runs residual | 0.0163636363636 |
Runs probability | 0.0384275678394 |
Amino acid sequence | MTQQRIASPFLYSCPSLGLHTPLSRFQPALDLGILSPWVRQEVFRGRGHRVMGCPPHRFP GPCVLLRVPASAQLAQEHQATAHEGRPC |
Secondary structure | LLLEEELLLEELLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLLLEEELLLLLLLL LLEEEEELLHHHHHHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |