ENST00000434399.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000434399.1

Source

Gencode19

Same with

lnc-GGCT-1:21,NONHSAT119872

Classification

intergenic

Length

1217 nt

Genomic location

chr7-:30555925..30602441

Exon number

5

Exons

30555925..30556128,30563983..30564102,30590252..30590397,30601082..30601744,30602358..30602441

Genome context

Sequence
000001 AGAAGGTACT TGCTTCTCTT TCTCCTGCCA AAGCATGACC TTATAATTGT AAGTTTCCGG AGGCCTCCCC AGCCATGCGG 000080
000081 AACTTTTTCC TAAAATTCCC TTTTCCACTG GTGTGTGGTG CAAGATGAGG CACATTTTCC ATGGATGGTG AACAGAGGGA 000160
000161 GGAGCCTTTT GATCACAACC AGGTCACCCC ACTTCTAAGC CACTGTGCCT CCAGCCCCAC AAGACTAAGG AGAGAGAGCG 000240
000241 CAGCGTGGTG GAGAGTGAGC TGTGCTGGGA CCATTGTTTC CGTAACCTCG TTTTCTGTGT CCAGCTGACA CACCTTCAAA 000320
000321 GTGGCATCAG GTCCTAAACT GTAGCTTGCA ATGTGCCTGT TTCCAGAAAC CAAGGTGAAA GTGCTTTTAG ACAGTGTTCC 000400
000401 CATGCAAGAG TCCCTTCCCA GCTTTTTTCT GGAAATGCAT GTTTCTCTGA ACTCTGAGTC CCAAGAAAAA TCACTTGAGA 000480
000481 CACCAAGAAA ATGGGGGAAG TGCTAAAATT GTGTGGGAAT TCAAGCTTAA CAATAAACAT CAAGACATTT TTGATAAAAA 000560
000561 TGAATCCACT GACATCGGGG AGGAGCAAGA GAACAGCACG CTGACACTGG GTCAGAGGCT AAGACCGACA TTTCTGGGAA 000640
000641 CCACTCCCGG AAGGGCACAG AGGAGACGCT TTCAGCCTCT CATCAGCCAG CCTGGCCTGT AGCTGCTGCA CGTTATGAGT 000720
000721 GTGTTCCTGG CATGACTGCT TCTAACAAAG AAATGCTGAG GCAGTGTCAC GCTGGTGTCT GTCCTCCTTA CAGAATGCCT 000800
000801 GAACAGTTCC ATTGACTCAA AGTGAAGATC AAAAGAACCA AATGACAGCA ATAGCCAAGT GTAATCATCA GTAACCCTGT 000880
000881 GTTCTATCCA CAGTTAAAAG AATATTGGCA GAGAAACAGC CTTGGTGTTC CAGCAGGAGT GAAGAGGAAC AGGAAAACGA 000960
000961 GTGGCAGTAG CCCTGAAACA GCCACTTCTG GTGGTTGCCA CTCACCTGAG GATGTGGGGT CTTGCCATTT GCCCAGGCTG 001040
001041 GTGTCAAACT CCTCAAGTAA TCCTTCTGCC TCGGCCTCCT AAAGTGCCAG GATTATAGGC CTGAGCCACT ACACACAGCC 001120
001121 CGGAGTTTTT AAAAAATACT CAATTAAAAT GCTTCATTTA AGTGTATGTC TCTAAGAAAA TTTAATAATT GATTAAATAT 001200
001201 TGTTGAATAG ACTGAAA
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Predicted Small Protein

Name ENST00000434399.1_smProtein_140:307
Length 56
Molecular weight 6107.6972
Aromaticity 0.0727272727273
Instability index 60.8509090909
Isoelectric point 6.01177978516
Runs 8
Runs residual 0.00606060606061
Runs probability 0.0452989754461
Amino acid sequence MDGEQREEPFDHNQVTPLLSHCASSPTRLRRESAAWWRVSCAGTIVSVTSFSVSS
Secondary structure LLLLLLLLLLLLLLLLLLLEELLLLLLHHHHHHHHEEEEELLLEEEEEEEEEEEL
PRMN -
PiMo -