NONHSAT054993

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT054993

Source

NONCODE4.0

Same with

,

Classification

sense

Length

872 nt

Genomic location

chr17-:57165340..57184025

Exon number

5

Exons

57165340..57165768,57167378..57167453,57168661..57168701,57181654..57181755,57183802..57184025

Genome context

Sequence
000001 CGCGCCGGTA AAAATGGCGA AATGGGGGTA GGCGGCGCTG GACCTGAAGA GATGGGGCGC GCAGGTGGGG CGGTTGTCAG 000080
000081 AGCCCCCTGA CGTGGGCGCC GGGCTTTTAT CGGCGATTTG ATCTGGCGAC CTCGGGCCGG CGCCTAAGAG GTCAGACTGC 000160
000161 GGAGCCTGCG GGTCGCCAGC GGCCCCGCCG AGAGCCGGAG GCAATGGATG AACAGAGCGT GGAGAGCATT GCTGAGGTTT 000240
000241 TCCGATGTTT CATTTGTATG GAGAAATTGC GGGATGCACG CCTGTGTCCT CATTGCTCCA AACTGTGTTG TTTCAGCTGT 000320
000321 ATTAGGCGCT GGCTGACAGA GCAGAGAGCT CAATGTCCTC ATTGCCGagt ctcgctctgt cgtccaggcc ggagtgcaat 000400
000401 ggcgtgattt cagctcactg cagcctcgac ctcctgggct cagTGCTCCA CTCCAGCTAC GAGAACTAGT AAATTGTCGT 000480
000481 TGGGCAGAAG AAGTAACACA ACAGCTTGAT ACTCTTCAAC TCTGCAGTCT CACCAAACAT GAAGAAAATG AAAAGGACAA 000560
000561 GTATGTCCTC AATTTCTTTG TTCAATATTG AATGGATTTT GCCTTTGTAT TGTTTAATGA CACTATATTG GTAGTTGCCT 000640
000641 TTTAGTTATT TATGAATAAG TAGTGTTATA TTTCTTGTTT TTAATTCTTT CAGTCATGCG CTGTTACTGT TAAGTAACAT 000720
000721 ATTCTTATTG TGTTTATTTA ACAACAGTTA TTTCATGCCA TGTATACACA GATACCTCTC GCCCTCCCCT CCCCCCACAC 000800
000801 AGAAAGTACT Ttgctagatg ataggcatac aaaggtaaat gagacatgat ttctgttaac tgtttaatgg gg
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Predicted Small Protein

Name NONHSAT054993_smProtein_203:406
Length 68
Molecular weight 7797.1984
Aromaticity 0.0597014925373
Instability index 72.8179104478
Isoelectric point 8.62042236328
Runs 7
Runs residual 0.0388372274752
Runs probability 0.0425719837484
Amino acid sequence MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRVSLCR
PGRSAMA
Secondary structure LLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHLLLLLLEEELL
LLLLLLL
PRMN -
PiMo -