NONHSAT054993
Revision as of 07:36, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054993 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
872 nt |
Genomic location |
chr17-:57165340..57184025 |
Exon number |
5 |
Exons |
57165340..57165768,57167378..57167453,57168661..57168701,57181654..57181755,57183802..57184025 |
Genome context |
|
Sequence |
000001 CGCGCCGGTA AAAATGGCGA AATGGGGGTA GGCGGCGCTG GACCTGAAGA GATGGGGCGC GCAGGTGGGG CGGTTGTCAG 000080
000081 AGCCCCCTGA CGTGGGCGCC GGGCTTTTAT CGGCGATTTG ATCTGGCGAC CTCGGGCCGG CGCCTAAGAG GTCAGACTGC 000160 000161 GGAGCCTGCG GGTCGCCAGC GGCCCCGCCG AGAGCCGGAG GCAATGGATG AACAGAGCGT GGAGAGCATT GCTGAGGTTT 000240 000241 TCCGATGTTT CATTTGTATG GAGAAATTGC GGGATGCACG CCTGTGTCCT CATTGCTCCA AACTGTGTTG TTTCAGCTGT 000320 000321 ATTAGGCGCT GGCTGACAGA GCAGAGAGCT CAATGTCCTC ATTGCCGagt ctcgctctgt cgtccaggcc ggagtgcaat 000400 000401 ggcgtgattt cagctcactg cagcctcgac ctcctgggct cagTGCTCCA CTCCAGCTAC GAGAACTAGT AAATTGTCGT 000480 000481 TGGGCAGAAG AAGTAACACA ACAGCTTGAT ACTCTTCAAC TCTGCAGTCT CACCAAACAT GAAGAAAATG AAAAGGACAA 000560 000561 GTATGTCCTC AATTTCTTTG TTCAATATTG AATGGATTTT GCCTTTGTAT TGTTTAATGA CACTATATTG GTAGTTGCCT 000640 000641 TTTAGTTATT TATGAATAAG TAGTGTTATA TTTCTTGTTT TTAATTCTTT CAGTCATGCG CTGTTACTGT TAAGTAACAT 000720 000721 ATTCTTATTG TGTTTATTTA ACAACAGTTA TTTCATGCCA TGTATACACA GATACCTCTC GCCCTCCCCT CCCCCCACAC 000800 000801 AGAAAGTACT Ttgctagatg ataggcatac aaaggtaaat gagacatgat ttctgttaac tgtttaatgg gg |
Predicted Small Protein
Name | NONHSAT054993_smProtein_203:406 |
Length | 68 |
Molecular weight | 7797.1984 |
Aromaticity | 0.0597014925373 |
Instability index | 72.8179104478 |
Isoelectric point | 8.62042236328 |
Runs | 7 |
Runs residual | 0.0388372274752 |
Runs probability | 0.0425719837484 |
Amino acid sequence | MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRVSLCR PGRSAMA |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHLLLLLLEEELL LLLLLLL |
PRMN | - |
PiMo | - |