ENST00000344893.3
Revision as of 07:37, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000344893.3 |
Source |
Gencode19 |
Same with |
, |
Classification |
intergenic |
Length |
3381 nt |
Genomic location |
chr19+:11750591..11797382 |
Exon number |
10 |
Exons |
11750591..11750711,11755054..11755176,11757042..11757088,11759173..11759299,11761172..11761232,11762468..11762868,11789135..11789235,11791207..11791787,11793361..11793487,11795691..11797382 |
Genome context |
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Sequence |
000001 GAAAAAGCCC GCGGCGTCTT CTCTGTCACC CGCGCTCGGC TCCCTGCTCG GTCGGGCTGG AACCTGTACT GGCAGCCGGA 000080
000081 GGTGTAGGTA GGAACCGGAA TACCTCGGAA GCCGGGAAAT GACGGAGTTT CATTCTTGTT GCCCAGGCTG GAGTGCAATG 000160 000161 GCGCGATCTC AGCTCACCAC AACCTCTGCC TCCCACATTC AAGCGATTCT CCTGCCTCAG CCTCCCGAGT AGCTGGGATT 000240 000241 ACAGTGTGGT GTGTTGAATA TTATAGTTTC AAAATCCTTC ATGTGTGTTA GGACTCAATG ATCTTTGAGG ATGTGGCTGT 000320 000321 GAACTTTACC CAGGAGGAGT GGGCTTTGCT GGATCCGTCC CAGAAGAAAC TCTACAGAGA TGTGATGTGG GAAATCATCA 000400 000401 GGAACCTGAT GTCTGTAGGA ATAAAATGGG AAGACCGGAA CATTGAAGAT CAGTACAAAA ATTCCAGGAG AAATCCAAGA 000480 000481 AATCATATGG CAGAGAGACT CTGTGAATGT AAAGATGGTC AATGTGGAGA AACTTTCAGC CTGATTCCAG ATGGTATAAT 000560 000561 GAACAAGAAC ACTCTTCCTG GGGTAAAACC ATGTGAAAGC AGTGTGTGTG GAGAAGGCAA CGTGGATCAT TCATCTCTGA 000640 000641 ATTGCTACAT CAGAGCTGAC ACTGGACACA AACCGTATGA GTGTCAGGAA CATGGAGAGA AGCCACATAA ATGTAAGCAG 000720 000721 TGTGTAAAAA CCTTCAGCTG CCTCCACTCC TTCCAAACAC ATGAAAAGCC TCACACAGGA GAGAAACCCT ATGATTGTAA 000800 000801 GGAATGGGAA AAAACCTTCG ATTCTCCCCA AACCGTTCGA AGATACAGGG TAGTGCACAG TGGAGATGGA CCTTATAAAT 000880 000881 GTTGAAGAAT TTGTGACCGT GGATAAGTTC GTTTCCTGTT ATGTGAACTT GGCAGATTAA TGCTAAATCC TGTGGGACAG 000960 000961 CATTTAGCAA CACCTAAAAA ACATGATAAA GAAATACCTG AGACTGGGTA ATTTATAAAG AAAAGAGGTT GAATTGGCCC 001040 001041 ATGATTCTGC AGACTGCACA GGAAGCATGG TACTGGAAGG ATGGCATCTG CTCAGCTTCT AGGGAGGCCT CAGGAAACTG 001120 001121 ACAATCATGG TGGAAGGCAA AGGGGGAGCA GCAGTTCACA CGGCCAGAGA AGGAGCAAGA GAGAGCAGGG CAAGGTGCCA 001200 001201 CAGACTTTTA AATGACCGGT TCTCACAAGA ACTTACCATC TCAAGAACAG CACCACAGGG ATAGTGCTAA ACCATTCATG 001280 001281 AAGGACCACC ATCCAGTCAC CTCCCACAAG GCCCCACCTT CAATATTGGG AATTACAATT CGACATGAGA TTTGGGTGGA 001360 001361 GATTCAAATC CAAACCATGT CCTTTTGCTT TTTTCTGTTT TGTTTGTGGA GTAGATTTTT CTCCATCCCT TTACTTTGAG 001440 001441 CCTAAGGGTG CCATTGCATG TGAGATGGGT CTCTTGAAGA CAGCATACCA TTGGATCTTG CTTTTTTATC CAAGTCACCA 001520 001521 CTGTGCCTTT TAATTGGGGC ATTTAGCCTG CTTACATTCA AGGACTCAGT GACCTTTGAG GATGTGGCTG TGAACTTCAC 001600 001601 CCAGGAGGAG TGGGCTTTGC TGGGTCCTTC CCAGAAGAAT CTCTACAGAG ATGTGATGTG GGAAACCTTC AGGAACCTGA 001680 001681 TGTCTGTAGA AGTCATATGG TAGAGAGAGT CTGAAGGTAA GGAAGATGGT CAATGTGAAG AGATCTTCAG CCTTGTTCCA 001760 001761 AATGGTATAG TGAAGACGAC TTTTACTGGA GTCAAATCAT GTGAAAGCAG TGTGTGTGAA GAAGGCAATA TGGATCATTC 001840 001841 ATCTCTTAAT TGCTGCATCA GAGCTGACAC TGGACACAAA TCAGATGAGT GTCAGCAACA TAGAAGCCAC ATAAGCAGTG 001920 001921 TGTGAAAACC TTCAGCTATT GCCACTCCTT TCAAACACAT GAAAGGCCTC ACACTGGAAA GAAACTCCAT GTAAGAAATG 002000 002001 TGGAAAAACC TTCATTTCTG TTCAAACCTT TTGAAGATAC ATGGTAATGC ACAGTGAAGA TGAACCTTAT AAATGTAAGT 002080 002081 TTTGTGGGAA GGCCTTTGAT AATCTACATT TATATCTTAC ACATGAAAGA ACTCACACTG GAGAGAAACC CTATGAATGT 002160 002161 AATAAATGTG GGAAAGCCTT CAGTTGTTCC AGTTCCATTC GAAAACATGC AAGAATTCAC ACTGGAGAGA AACCCTATAT 002240 002241 ATGTAAACAA TGTGGCAAAG CCTTTAGATA TTCCAGTTCT ATTCGAAATC ATGAAAACAC TCACACTGGT GAAAAACCCT 002320 002321 GTGAATGTAA GCAATGTGGG AAAGCCTTTA GTTATTCCAG TTACTTTCGA ATACATGAAA GAATTCACAC TGGAGAGCAG 002400 002401 GTGTATAAAT GTAAGGAATG TGGGAAAACA TTCACTTATC CCAGTGCCTT TCATAAACAT AAAAGTACCC ACACTTCACA 002480 002481 GAAACTTTAT GAATGTAAGG AATGTGGGAA AGCATTTGAT TGTTTTAGTT CCTTTCATAG TCATGAAGGG GTTCACACTG 002560 002561 GAGAGAAACC CTATGAATGC AGAACGTGGA AAAGCCTTCA GTAGTTCTAA GTACTTAAAA ATACATGGAA GAACTCACAC 002640 002641 TGGAGAGAAG TCCTATGCAG TAAAGAATGA GGGAAAGTAT TTTATTGTCT CAGTCCCCTT CAAAGACATG AAAGGACTCA 002720 002721 CATCAGAGAA AAGTTGTATG AATGTAAAAA ATGTGATAAA GCCTTCCATT CGTCCAGTAC TGTTAGAAAC CATGAAAGAA 002800 002801 GTCACATTTA AGAAAAACAC AGTGATGTTA GGAATATGGG GAACCTTTCC TTTCTCTTCC AGTCTTTGGA AGGCACAGGG 002880 002881 TATGACACAC TGGTGACCTT ATAACTGTAA GGAGTGTGGA TAAGTATTTA TTAGTCCTTG TGTGTTTTAG ATACATGAAA 002960 002961 GAATTTACTC AAAAGGAAAC TCTATGAATG TAAAGAATGT GGTAAAACCT GTGTAGTTTC AGTTTCTCTT GAATAAAGTC 003040 003041 ATTTCCTGGT ATTCTCAGGG GATTGGTTCC AGCACCCCTT GAGAATATAT AATTTTGCTC AAGTGCTTTA CAGAAAAGTG 003120 003121 TATTTGCCTA TAACTAGGCA ATCCTGTATA CTTTAAATCA TCTCTAGATT ACTTATAATA CCTAATGCAT TGTAAATGCT 003200 003201 ATGAAGACAA CTGTTTTATT GTATTTAGGG AAGTATGACA AGAAAAAACA TCTGTACATA TTCAGTACAG ACACAACCAC 003280 003281 CATACGGCTA CCTACCTAGT ACACATCATC TACAATATAA CATTTTCTTT TTAAAAAACA GTTATGGATT GGTTTCATTA 003360 003361 AATGACCTGC AAGCGTGTGT T |
Predicted Small Protein
Name | ENST00000344893.3_smProtein_1211:1438 |
Length | 76 |
Molecular weight | 8815.1775 |
Aromaticity | 0.12 |
Instability index | 62.168 |
Isoelectric point | 8.80792236328 |
Runs | 10 |
Runs residual | 0.0156028368794 |
Runs probability | 0.0168698109875 |
Amino acid sequence | MTGSHKNLPSQEQHHRDSAKPFMKDHHPVTSHKAPPSILGITIRHEIWVEIQIQTMSFCF FLFCLWSRFFSIPLL |
Secondary structure | LLLLLLLLLLHHHLLHHHLLHHHLLLLLLLLLLLLLLEEEEEEEEEEEEEEEEHHHHHHH HHHHHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH HHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTT TTTTTTTTTTooooo |