NONHSAT079029
Revision as of 07:48, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT079029 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5168 nt |
Genomic location |
chr20+:23030380..23035547 |
Exon number |
1 |
Exons |
23030380..23035547 |
Genome context |
|
Sequence |
000001 AGTGCCTGGT GGGAAGGGCT GATGCCGCAT ACTCGGATTG CTGGGTTCTC TGGCCGCCCT TGCGCCCGCC CTCGCGCATG 000080
000081 GGATCACCTC GCCGGGATGA GTAAACCCTG CCCTGGCGCA GGGAGGTTCT CGGGCGGGGC CGACAGGGGC AGGCGCCAGG 000160 000161 GAAGGCCAGC ACCCCTGTAA CAAGACGACT GTCCCCGCCC ACCACTCGGG CCCCCACGCG TGCAGCCCTC TTTCATCTCT 000240 000241 TGGTCCTCCT TTCTTTCTTT TCATACATGT TACAGCCACT TCCAAGGAAA GCCTGGATTG CAAGAGCTCT GGGAACCGGA 000320 000321 GACTTCAGAG AAGAGGGCTT TGAATGGGGA GTGGGGGAGG TGGTGCACAG GACCTGCAAG ACGCTGGGAG GGGTGATCGG 000400 000401 CACCAAGGGC ACTTTGGGAG GACCTGCCTA GGACGTGGAC TTCCCCGAAG ACAGGATCGC AAGGAGAGAC AGCTGGATCC 000480 000481 TGTCCGCGGC CAAGGTGCCT GGCTCAGGAA ACCAGCGGAG CGCGCTTGGC CTCACAGGAC AGTGGGTGTG GCTGGGGTGA 000560 000561 CGGGGCAGGG TGGGGAAGAC TGGCCTAACA CCAGCGCCCT CTGCCCCATG GCTGGCCAGG GACCCGCGAG TCCCTGGACA 000640 000641 CGCACTGGCC AACGCCAGAC CCCATCTCAT CGGGTGGGGA AGTCGCGGGG ACACTGTCAG GGCGCCGAAG TCCGGACCCG 000720 000721 GCTCAGAGGC GGTGGCAGGT GAATTGCTGC GGCGCCGGGT AGGGGCGGGC GCGTGGGAGC GAGTCAGCCT GGCCAGTTTC 000800 000801 GGCCCAGCTT CCGAAGGATG GTGCTTCTTG CACCCCAACA GAGTGGCTGG CAACCCCCCA GGGGAGCGCG CAGGATCCCA 000880 000881 GCTGATCCCA CCCGGGTCGG CTAAGGAGGT TTCCATTTCG TCCAGAGTCC GAATTGATAC CCACGTGCAT AGAAACGCCA 000960 000961 CTTGCTCGGC AAAGGGCACT GAAGAGCCAC CGTCCTGTGG ATGGGCAGGG TGGGGGGGGG GCTGGAGGAG GACATGGGAA 001040 001041 TCCGTCACTT TCGACCTCTT CCGGTGGTTC ACTTACCGGG AATGCGGAAG AGTGGGTCTC CCCCTCGGGT CGCCCCCATA 001120 001121 ATGGTGAGAG GCAAACTGTT TAAAAACACC CTTGCCTCTC TCCTCTACTG TCCTCACAAC GAGCGCCAGG GGGCGGCGCT 001200 001201 GTCGAGCTCT AAACAAAGCC AAGGAAGTTG GAGAAGTTTC GGGCTAAAAA GGGTTAAGGT GTAGGAGCAC AGAGTCCTCC 001280 001281 TTCTGGGGTT GGAAGCTCCG TTCCCGGGCA GCTCAGCGTG GATTCCGCTG CGTTCACCTC TTGCCTCCAG GGCCCAGTAG 001360 001361 ATCCTGGGCT TTAAACAAGA ACAGAGAGTA TGGCGTCTGC CACGTGCGAC AGACACGCAC CGGTGGGGTG GGCCGGGCTG 001440 001441 GACTGGACTG ACCTGCAGTG ACCAAACGGG TGGGGCGTGG ACACTCTGAA AGTGAAAAAG GCAAGCACGA CTGTCCCGCC 001520 001521 GCACACTCCC CAGCGCCTTG GGGCAGAGAG CCTCCAAACG TCCCGCTGAG TTGAGCTCTT CGCTGGGAAG GCCGCCCCAG 001600 001601 CACCCAGGAA ACGAAGGAGC TGCTGGACAC GGGGGTCTGA AGCTCCCGGA ATGCACACAG CTGCGCCTCC CCTGACGCGG 001680 001681 ACCCCCTGGG AAGAGGAAGG GAAGAGCGGC AGATAGCACA GTAGGGCTTG TCCGGCGGGA GCAGTCAAGC TGTGGCTGCC 001760 001761 TAGGCTGAAT CAGGGGGTCG TGACTCCGGT GCACAGCCTG CCTACGCGGG ACGCAAAAGC AGGGCTGCCT GCGGTGCCGC 001840 001841 CATGGGGGTG AGGGTGGAGC TTCAGATAAG GGCAGGAACC TCGTTGGGGC ACTGCTGAAA GGTCTCAGAA TGTGGGGACA 001920 001921 ATTCCCAGAG TGAATGAGAC AAGAGAGGGG GAcaggatcg gttacagaat cagaaaccag tgcaaagtga aaatgtgggg 002000 002001 tccattgttc aattacaagg attcaagact gtgatagcaa agtgttaaac aaggaatgag gccctGGGGG GGTGATGAGA 002080 002081 GGGCCCTTCT GAACCTGCCA GCCCTAAAAG CCACTGAGGG ACATTCAAGG ATCAGATCTC ACCCCACACC AGGCTGGCTG 002160 002161 AGTTCTTGGA TGGATTCTAG CTGATTCACC AACACAATGT TTCACTGGAC GTCCTACACA GGTCCACTTG CACCCATTGC 002240 002241 TGATTCTTGC AAAGAAAAAA AAAGTGTGAG AACAGCCCCA ATAGCTGAGT CCACTAAGAA CTCAGTGATG TCTGTGAAAC 002320 002321 TTGGATCAAC CCTATATGAG GAGGTGCAGA TGTTGGATGT TTCTGTATTA GAAAGAAACT AGAGCAACAA CAGATAGAAG 002400 002401 CAGAGCATTG TCCCATGGGG GGTACCACAG TGTCTGGGTT GCCCTACACA AGGATGGGTG GACATGACCC ACTTGGCTTT 002480 002481 CCCACCTGTA AGGGCTTTAC CCCTGACCCT CAGGATACCT TTGCCTTGTG GGGCCTGCCC TCAGCCGCTT TGTTTTTCCT 002560 002561 CTCCAGCCAA TACCTTGGAG GCTTTGCATA TTTTAGACTA CCTTCTGGTG ACTGAAGGTC CCCTGTCTGT GTTCTTGCCC 002640 002641 CATCCCTATC TTCCTATCTG TGCCCCCTGC ACACCAGGGT GGGCCACTCC TTCCTATCCC TTTGCAGATA ACACATCCAC 002720 002721 TTCCCAATGC TTGGCCCAGT TCCTGGCCCA GCACCCTCAC TCTGGCCCAC CAGCAGACTT GCTTTACTCC TGAAACAGCT 002800 002801 CCCTTGAAGA ACACCCATCT GGTCCTAAAT ACTGTTGCCA AAATCTTGTT TTCAGCCATC CTTCTAGAAG CCTTGGTGCC 002880 002881 ATTTGCACTT GTGACCCTTC ACCATTCTCA AGGCTCCTCC TCCAATTACT TTTGAGACAC ATGTTTTCCT CCCTTCCTCT 002960 002961 CCTGTGAGCC TTGGGGAGGC CCCTGGGATC CTCTTGTACC ACCCACTAGA GTGGCCATTC TCAAGGTTTT GCTGGTGGTC 003040 003041 TTCATCATCT CTTTACAACC CACCTTTTGG TGAACTTACC CATTCCCCTG GCAGTGATAG CAGTGTCCAA GGAGATTGGG 003120 003121 GAGGGAGTAT TCTAGAAGGG ACCCTTACCC CATCTTTCCC AGTATCAATA GTTGGTCCAC TGAGGTTTTA AACCATGCAC 003200 003201 TTGCCTTTGA CTTTCTGCTC TCCTTCATCC ACTGCCTAGT TTTTGTGTCT TGTTTCCCCT GATCACTGCT CCTGCCTTCT 003280 003281 CAATTTATGC TGAGACAGTT GGGTCCCCAG CTCTTTTCCT TGCTGCTTAT CTCTCCAGCT CTCCACCGTG GCTGAGGCTA 003360 003361 CTCTGATCCT CATACTCCCT CAGTGCTGCT CCCACCCGCT GGGAGAGCCC ATACTCTTTC CCCTCCGCAC TGAAGATGCT 003440 003441 CGCGATAGTG CCTCTACTCT GTGGCCACAG ATGAGAAAAT TTGCACTCAA GGGGCTATGC TGGAATTTGG ACCCAGAGCC 003520 003521 TGCACCCCTT GCACCTCACA AGGCTTCAAG GACCAGTGTT CTGCTGGTCT CCATGAATGA GGAAACATCC TGGCAAGGGA 003600 003601 GGCTCCTGCT CACTGTCAGA GAAGCACCTT GTCCGCTCAT CTCCACCCTG TAGTTCATGT CTCTCCCTCT GCTAGCAACA 003680 003681 TTCTCGTCTG CCAGGCTCTT CACCCACTGA AATCTTTCCA TTCTTTCAAG TCCCAGTTCA AGCTTCCCCA TCAGCAAGTT 003760 003761 TTCTGAATAA CCCAACCAGA ACTGATCTGT CTGTGATTCC CATAGACAGG TCGTTCTCTC AGCTCTTTAG TACTCACCAC 003840 003841 TCCCTCCCTG CCCTGTACCT AATCATGCAT ATACCACACT TTTTGCTGCA CTTATACTCC AGATTCCCAC ACATTTTTGT 003920 003921 ATCCCCTTAC ACCTAACAGC ACGCTTTGTA ACTAGACAGT GCCCAGAGCT TATTGGAGCA CCTGTGGTAG ATGTTTCTTT 004000 004001 GTCCTCTCCA GGGTGATTTT CTCACATTCA CCTGCAAAGA CAAGGATGGG GGACCTCAGA GCCTCAGGGT GAAttaagag 004080 004081 tgtggacttt ggagccgact tggctgcact ggagacccag ctccggcatt cacaagtttt tgtttattgt taagatttga 004160 004161 ctaataaccc ctccccgtgt agctcagttt ccttgactgt gtaatgggaa tagtccctcc ttcaaagtgt taggatgaag 004240 004241 attaaatggg ttatacatgt aaagcattta gaacagagga gccgtagtca gctctcaata aattttagCA AAAAAGAAAA 004320 004321 CACTCAAGTC CCTAGAATTT GGATTCGGCA TCTGATTGTA TTCAATATCC AGCATGGTTT CTTTTCCATG GTAGGGACTC 004400 004401 ACCAAATGTC TGTTGGATTT AATTTGTTCC AGCCAAGCAT TTCTACCACT AATAACAATA AGCAATTGTG AAAAAAAATC 004480 004481 AGGGATGGAG GCATAGGGAA GAAATTGAAG CATGTCCTGT Cttaggcttc ccatctgccc tagagacatc catagtgact 004560 004561 gtccccattg cccaggtgtg gaagctgaag gccagagaga atcagtgact ctccaatgtc acacagctag taagtggtga 004640 004641 aacaaagatt caccggcctg TGGTAAGGAT GAAAGAATTA CAATGTGGAG TATgtctgag cccccatttt gccacatact 004720 004721 ggcctacttg gctaagttat ttcaatctct ggtgttcttt cccaaaaact ggagatataa tatctaatat gtaggattag 004800 004801 tgtaaaataa aaCTCTTTCC CAAaaactgg agatataata tctaatatgt aggattagtg taaaataaaa cagaaaatgt 004880 004881 acatacagtg actattactt ttcttggaag acagcagctg tttaacaaat atggttgtta ttactGCTAT ATATAAAAAA 004960 004961 AAAAGCTTTA TCAAAGACCC CTGTGGTCAC TGGTAGCCAT CCAGGAAGTC TTGCTTTTTA TTTATTTATT GACTGATTGA 005040 005041 TTGACttttg agacagagtc tcaaaatcgg tagcccagac tagagtgcag cagtgttatc atggctcact gcagccttga 005120 005121 cctcccagat caagtgatcc gcctatctca gcctccagag tagctggg |
Predicted Small Protein
Name | NONHSAT079029_smProtein_2414:2614 |
Length | 67 |
Molecular weight | 7021.8713 |
Aromaticity | 0.166666666667 |
Instability index | 40.1045454545 |
Isoelectric point | 5.45904541016 |
Runs | 11 |
Runs residual | 0.0160587915079 |
Runs probability | 0.0208604326252 |
Amino acid sequence | MGGTTVSGLPYTRMGGHDPLGFPTCKGFTPDPQDTFALWGLPSAALFFLSSQYLGGFAYF RLPSGD |
Secondary structure | LLLEEELLLLEELLLLLLLLLLLLLLLLLLLLLLLLEELLLLHHHHHHHHHHHLLLEEEE EELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLL LLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiii iiiiii |