NONHSAT122730
Revision as of 07:52, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122730 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2835 nt |
Genomic location |
chr7-:107788068..107797082 |
Exon number |
3 |
Exons |
107788068..107790592,107791140..107791198,107796832..107797082 |
Genome context |
|
Sequence |
000001 GAAACCGTTT CTACATGGCT GGCTCTAAGC CAGATGATAT TTCATAGTGC AAAGAGGGAT AGAACCTCAC TGGTGGCCAA 000080
000081 ATGTGATTAT ATGCTATAAC CCTGTGCCCC TACTCTGACA CCCACCCCCA AGCAGTTACC CTCTGTTGGA AGCCTGCAGC 000160 000161 TTTCTTTGTT TGTTTCTTTA ATTATACAGA CAGTAGGATC TGCATCCTTA CTAGCATATA GAAAAATCAG AGAAACAATG 000240 000241 CAACCAAGAG TGCTGTTTTC ATTTGTTTCT TCTGCATCCT TTTAATGGAA TTTTGTAGGT CTCTTGAAAG TGATGCAGAA 000320 000321 GACCACAAGC CTTTGAAAAA AGGAAGTCGA ACTCCTTCAG ACAGGACTGT GAAAAAAGAA GATAGTGACG ACAGCCTAGT 000400 000401 TGACTATGGA GAAGGGGTTA ATGGCCAGTT CAATGAGGAT GGCTCCTTTA TTGGACAATA CAGTGGTAAG AAAGAGAAAG 000480 000481 AGCCGGCTGA AGGAAACGAA AGCTCAGAGG CACCTTCTCC TGTCAACGCC ATGAATTCCT TTGTTTAATT TTTAAGCTCT 000560 000561 TTGCCAATAT TCCATTTCTC TAGAATGTTT ATCCTAAGCA CTTGTTTGTC AGCCCTCTCA TACTATGAAC ATATGGGTAG 000640 000641 AGAGTATATT TTCTGCTGTA TGTTAGTATT ATGAGAATAG TTACAGCAAA AACATAACTC AGTCAAATGA TATGTTAATA 000720 000721 TGAACTGGAA TGCAAAGTGC ATACTTTTTC ATTCAAAATG GGTATTCTTG ATTTCCTCAG AACTGATAAA AAATAATGCA 000800 000801 ACATCACCAA CAGATCCTGT TATTTCCTCT GCAGGATACA GTTCAATATG ATGCATGAAA AATGCTCCAC ATTTAAAGGA 000880 000881 CATACCCGTG TATGTTATGA AAACATGGTT TGATACTTTG TTTATACTAC CCTCAGCTGA ACCCCTATAT ATGAATTCCG 000960 000961 TTTTCATTGT CAAGAATGTT ACTGTAGTAT TCTCTAGAAC TTCAATGTCT TTGTGGACAT TGTTGTGAAA TTGGTGACTA 001040 001041 TGTATAGCTG TCGTTAGTCT TTTTGGGAGA CTGTTAGGAA CAGTTTGTAC AGTATATACT TGCTAAATGA GTTCATTATG 001120 001121 ACAGTCACAT TGCTGATGCT TACTGAGAAC TATTACCTAC TCTTGGCTCC TGTTACTCCG TAGGCTTCTT AATCTTCCAG 001200 001201 GCATTACAGC AGCACAGTGT TCTACTTTTT ACATCATTTC TATGTTCGGT TGTTTTTAGG CATAAACAAT GTGTATTGCA 001280 001281 GTGCATTTCG GCATTTGTGC CATACTGAAA GAATCAAAAA CAAATCATCC AAATTAAATT TCAAACATTA TTTCAGAGAA 001360 001361 CACAGGGCAA GACACATACA GTGCCTTCAG ATATTAAGCA TTCCACAACA TCGTGCATTC TGTATCAGCT GGTCCAGTCC 001440 001441 ATTCTGGGTC CTAGATTACT GTCATTGTCT AAAAGTAACT TTTAAAAAGC AGAGTTCATG AAAACTGCAA TGCTGGGAAA 001520 001521 AGAAGGAAAC ATGAAAATAA AAATAAGACA GTTTATTAGA AATAGCATTT CCTCATAAGC ATAAAAAGAA AATCTTTGTT 001600 001601 GCCAACTGAA GCACATGATG ATTTTGTGGT CCTTTATGGT TTCTATTACA TTCAGTAAGA AAGATGTCAA CATGCTAGAA 001680 001681 AATTAATTTT AAAACTAAGT TATTCCAACA CTAAAAGCAT ACAACAGCAT GCCAACAGTA ATATATTATT CTCCAAGACT 001760 001761 TTACCTATGT AAGTGTTCAA AACTCTGCAG CATTAAACAA CGTGTATGCA AATTGTTATG GATACATTTC AGAATCTAAG 001840 001841 AAATCAGGCA AGTGCTTAAA AGGCCAACGG TCCAAGGGAT TACATCTGCA GTTTAAAAAG TAAATATATA TTCTATCGTA 001920 001921 TTCATAAACA ATATCTATCA AATGGGTTAC CTCCAAATAT GAAAATCTAT AACAACCTAT GGTTGAAGGA ATGCTCAGTT 002000 002001 TCATTTGCCA ATAAATTGGT TTCTCATAAC TTGCATCAAG TTTAATTTTA AGTAAAGCTT TTTATATGTA GATATTTTGT 002080 002081 TGAATTTGTA AATACACTTA AAATGTAGAT GCTATATGCT TATAGGTGTT ACATACAAAT AAACATGCAA TGTTTATGTT 002160 002161 GTACTGTATA AGAGGTAAGC TAATTAATGC AGTGAATGGG ATTGGAAAGC ATCTACTTAA ATATCTATTG GGTTCCCCCC 002240 002241 TCCCCCCACC TTTTTTGCTG TGAAACTGAA ATAGTGAACT TTTCTACGTA TTGACAGCAG ATTTTTCGAT GAAATCTTCA 002320 002321 GAGCTTTGCC TATGGGGCAC AGTAGGCCTA GTAACCTGGC ATGTTTGATA TATGTAGGTA AAGCATAATT TAAAGTAATC 002400 002401 CCAGGTAAAG ATGGCCCTAA ATACTTTCAT GTCTCTATAT TCATTTTTCA CAGATCCACC TGTCTCTTGA AAATATAAAA 002480 002481 AGACAAAACA GGTTTGCCTT GGCATCAGAG AGCACAAAGA TTAAAAGTTA CTTTAAATTT GCCAATATTT TGGGAGAACA 002560 002561 ATAAAACTAC ATTTTTTCCT CTTCCATACT GGTAGATGCG AAATTTATCT GTGCATGAAA GGGTCACTTC TGTAATAGTG 002640 002641 CAACAGATTT GGTATTAAAA ATTAAATGTG GTTTTAAAAG TTCCTCTCTC TTTTGTAATT TATGTTCCCA ATTGAGTGTG 002720 002721 AATGTCCAAG TAATGGTGTA TGTAATGGTA CAGGCAAATG TGACTGGATT TCCCTCAAAA AAGTAACTAT TAAACAGTCT 002800 002801 TGATCTCTTT GTGACTTTTA ACTTTTTCAA ACATA |
Predicted Small Protein
Name | NONHSAT122730_smProtein_284:547 |
Length | 88 |
Molecular weight | 9519.11 |
Aromaticity | 0.0689655172414 |
Instability index | 45.1298850575 |
Isoelectric point | 4.53424072266 |
Runs | 13 |
Runs residual | 0.0111658456486 |
Runs probability | 0.0319120025002 |
Amino acid sequence | MEFCRSLESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYS GKKEKEPAEGNESSEAPSPVNAMNSFV |
Secondary structure | LLEEELLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLEEELLLLLLLEELLLLEEEEEEL LLLLLLLLLLLLLLLLLLLHHHHLLLL |
PRMN | - |
PiMo | - |