NONHSAT004242

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT004242

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1950 nt

Genomic location

chr1+:85742398..85865646

Exon number

5

Exons

85742398..85742480,85743324..85743421,85842449..85842518,85846057..85846248,85864140..85865646

Genome context

Sequence
000001 CTGTTCCCGC CCCCGACCGG AGCCTTTCGG GTGGCTCCGC CCACAGCGGG CGTTTCCTCA AGCCACGCCT GCGCAGGTCG 000080
000081 TCGGGGGAGA CTGATGAAGA GACGACTATC CCCAGACCGT ATTTTAACTA CTATGGCGCT GTGTAAGAAG CAACCTGAGA 000160
000161 AGTGTGGATG AAAAGCTACA GCTTCCCTGC TGAAATACCT TAGTGAGAAT GCATAAAAAC CAACTCTAAA TGATGCACAA 000240
000241 AGCCACCGAG AGTGACATTC ACAATGAGCA TTTACCCAGC ATTTTGTGCT GGCATCTTCC AGGATGTACA AGCATCCCAA 000320
000321 CATAGTCTCA GATTCTTGGT CCCTGGCACT GGCAGAGCTG AAATGGTCAT ATTCCCACTG GCCTCTGGTT ACATGATCCA 000400
000401 TGCTGCCTTC TGTAGTCACA TATTATTTGT GATAACAAAC AAGACTGGAC TGGATCCTGA ATTCTTTTAG TGCACTACCT 000480
000481 CCAGTATCTA GCTTCAACTC TTCAACTAAG AGCAAAAGTG CTAAGCTGGA CAACTTGATA GAAATTTCAA GGGACAAGTC 000560
000561 TCATGTGTGA TGTGCGTGCC ATACAGAGAG TTCACCAGAA TATCTAACGC CACAACCAGG GACATTCAAA CTGCAAACCA 000640
000641 GGTTGAGAAT TTGCTAACTG CATGCCGTGG ACAGCTTTTC CCAAGGCCAT CAGATGAAGA CTTCTTATGA TATTCTTACC 000720
000721 CCTCTTAATT TTTCCTTGCT TATGCCTACT TCTTTCGCTT GGCAGAATAA GGCTATGGTT AAAGTTTCAC AATCCTTAGT 000800
000801 TTTTGTGAGT AATCTGACAG CATGTTGAAT CTGTTATGTC AAATCTGAAT CTTTAAAAAA CCTGAGATCC TTTAGTCCAC 000880
000881 CTAGTGGGTA ACTTCAGCAA CATCCCTAAT ATCCCTAATG CAACTGTTTG TTCAAATTGT ACTAGTGATC TCTTTTATAG 000960
000961 AGTTAGTACT GTCTGTTTTA ATTTAACCCA TTCCTGGAAT GCTATATGAT AGAATTGCTA CCGACTAAAT GAATAGGGAG 001040
001041 AAATCTGTGC AATTGCTAAT ACTTCTTGTT ACCCATAGAT ATAATGAGTA TCCGGCCTGG CTCATTCTTT GATCTATTTA 001120
001121 ATTTCAGTTG GTTTAGTTTA TGGGGATCCT AGATAAAGGA GCATACTCCA AACTCCTGGC ATTATCCTTT TGATAGTCAT 001200
001201 AATAGTAGTT TCTCTGGTAC ACTATATCCT CTCGAAAAGT TTTAAAGGTT GCACACAGCC ATTCATCAAA CACCAAAGAG 001280
001281 TCTCTTTTCT GCTGGAATGA CAAAAACTCA AATAAATGCA TGATGATGAG TACACCATAA CCTATGAATG ACTTGTAGAG 001360
001361 ACCAGAAACC CAGCATGATA ATAAGAGTAG CATTAATGCC CTTAGTTTTG GTCATGCACT CACCCAGGTG AAAGCATGAC 001440
001441 TGAAAGGGGA AAATTGTTAA ATACAAAATA TAGGAGGCCA TTGTTTTGGA CTAAGCTTCT GCACTAGGCC CCACAGCTCC 001520
001521 TGCATTAGGC CCCAACAGAT TTGACTAAAA ATCAAAATGG AGTTATCCAT GCTGAAGTTC CACATCACCA AACTGAAACT 001600
001601 AAGTTGTTAT ATAACATTCC AAGAAAGCAG GAGAGAGAGA TAGCAGCCAA TTTCCCAAAT AGGCCAATTT CAATCTTCAA 001680
001681 TCAGTAGGAT AATAGTTTCC TCTGTTTTAA TCCTTAAAAG TAACCTGATG CTAACCAATC TTTCTATTTT TCTGCCTCCC 001760
001761 TGTCCCTGCC TTTCAAGGAA AGTAACTTTG AAATAATCAA TCTGTTTTTT GTTCTTCATT TTTGCTTTCC TTAGCCCTTT 001840
001841 CTGTCTATAA AACCAACCCC TTCTGTTCAA CTCACTGGCA AATTTATTGT ATTTTATGGC ATAAAATGTT GCCTGATTCT 001920
001921 AGAATTGCAA TAAAGCCAAC CGTGATCTTT
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Predicted Small Protein

Name NONHSAT004242_smProtein_263:469
Length 69
Molecular weight 7511.6989
Aromaticity 0.147058823529
Instability index 50.2794117647
Isoelectric point 6.21929931641
Runs 11
Runs residual 0.0212639109698
Runs probability 0.0547847312553
Amino acid sequence MSIYPAFCAGIFQDVQASQHSLRFLVPGTGRAEMVIFPLASGYMIHAAFCSHILFVITNK
TGLDPEFF
Secondary structure LLLLHHHHHHHHHHHHHHHHHLLEEELLLLLEEEEEEELLLHHHHHHHHHLLEEEEEELL
LLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLL
LLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiii
iiiiiiii