NONHSAT144842
Revision as of 08:07, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144842 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3298 nt |
Genomic location |
chr17+:1481377..1489848 |
Exon number |
5 |
Exons |
1481377..1483747,1483764..1484054,1484625..1484729,1487621..1487670,1489368..1489848 |
Genome context |
|
Sequence |
000001 TCCCTGAAAC ACCCAGCAGA AACCCTGGTA CCTGTCCCCT GAAGCAGGAA GATGAGCCCT TCTGGGACAG GCTGACCCTG 000080
000081 CCTCAGAGTC TCAGTCCCAC CAGCAACCTC CCCCCGGCCA TTCCCACACC CTCGCCCACC AGGCCACCTG CGGCTTCCAG 000160 000161 GACTTACACG GCAGCGTACA GGCCCCCGAC AGCGGAGTGG ATGAATCCTC GCACGATTGT GTGCAGGATG AAGGAGAGGA 000240 000241 TCTGGGGGAG GAAAAGGCGA CTGTGGGCAT AAGGCCTTAA GGGACCGTCC CCTCAGCCCC CGCCCTCCAA TTCCTGGGGG 000320 000321 CCCTCACCCC AGGGGCAGTG TCAGCCTGGA GTTGGATCAA CCCCATCCTC CGGAGCCAAT TGTGAATTTT CAGAAATTTT 000400 000401 GCAAGCCAGT CGTTAACACA GTCATTTTTT GTTTGTTTGT TTGTTTTGTT TTTTGTTTTG TTTGAGAAGA AGTCTTGCTT 000480 000481 TGTCGCCCAG GCTGGAGTGC AGTGGCGTGA TCTTGGCTCA CTGCAAGCTT CGCCTCCTGG ATTCAAGCAA TTCTCCTGCC 000560 000561 TCAGCCTTCG GAGTAGCTAG GATTACAGGC CCACGCCACC ATGCCCGGCT AATTTTTGTA TTTTTTAAGC AGAGATGGGG 000640 000641 TTTCACCATG TTGGCCCGGC TGGTCTCAAA CTCATGACGT TGTGATCCAC CCGCCTCAGC CTCCCAAAAT GATGGGATTA 000720 000721 CAGGCATGAG CCACTGCGCC CAGCCTAACC GAGTCATTAT TAAAAATTAA ATTATAGGCT GGGCAAGGTG GCTCACGCCC 000800 000801 GTAATCCCAG TGCTTTGGGA GGCCGAGGAG GTGGATCACC TGAGGTCAGG AGTTCGAAAC CAGCCTGGCC AACATGGCGA 000880 000881 AACCCTGTCT TTACTAAAAA TACAAAAAAT TAGCTGGGCG TGGTGGTGGG CACCTGTAAT CTCAGCTGCT TGGGAAGTTG 000960 000961 AGGCAGGAGA ATCGCTTGAA CCAAGAGGTG GAGGTTGCAG TGAGCTGAGA TCACGGCATT GCACTCCAGC CTGGTGACAA 001040 001041 AGTGAGACTC TGTCTCAAAA AAAAAAAATA ATAATAATAA TAATAATTAA ATTATAAGCC GAGAATGGTG GCTCACACCT 001120 001121 GTAGTCCCAG CACTTTGGGA GGCTGAGGTG GGTGGATCAT ATGAGGTCAG GAGTTTGAGA TCAGCCTGGC CAACACAGTG 001200 001201 AAACCCCATC TTTACTAAAA ATACAAAAAT TAGCCGGGTG TGGTGGCGGG CGCCTGTATT CCCAGCTACT CAGGAGGGTG 001280 001281 AGGCAGGAGA ATCGCTTGAA CCGGGGAGGC GGAGGTTGCG GTGAGCCGAG ATAGCACCAC TGCACTCCAG CCTGGGTGAC 001360 001361 AGAGCTAGAC TCTGTCTCAA AAAAAAAAAA ATTACATAAA TTTATGACTA AATAAATAAA TTATATTAAA GTAAAGGTAA 001440 001441 TGAATACTCA AAACTCTGAA AACTCATCAC TTCCTGGCCT GGTGCAGTGG CTCACACCTG TAATCCCCAC ACTCTGGGAG 001520 001521 GCCTGGGAGG ATCACTTGAG CCCAGGAGTT CCAGACCAGC CTGGGCAACA TGTCAAGACC CCATCTCTGC AAAAAAATAT 001600 001601 AAAAATTAAC TGGGCTTGGT GGTACGTGCC CGTAGTCCCA GCTACTCAGG AGGCTGAGGT GGGAGGATCA CCTGAGCTCG 001680 001681 GGAAGTCAAG GCTGCAGTGA GCCAAGATCC CACCACTGCA CTCGAGCCTG GCTGATGGGA GTGAGACCCT GTCTCAAAAA 001760 001761 AAAACAAAAT GAACGAACAA AACCATGGAA AACCTCATCC CTTCCTAATT ATTTTACTTG GTTCACTAGA GCCTGTGCAC 001840 001841 GCATCAGGCT TTCCTTTTTT TTTTTTTGGA GACAGAGTCT TGCTGTGTAG CCCAGGCTGG AATGCAGTGG CACGGCTCAC 001920 001921 TGCAAGCTCC GCCTCCTGGA TTCAAGCAAT TCTCCTGCCT CAGCCTCCCT AGTAGCTGGG ATTACAGGTG CATGCCACCA 002000 002001 AGCCCGGCTA ATTTTTGTAT TTTTTGTAGA GACGGGGTTT CACTAGGCTG GTCTCGAACT CCTGACCTCA GGTGATCCAC 002080 002081 CCGCGTTGGC CTCCCAAAGT GCTGGGATTA CAGGCGTGAG CCACCGTGCC CGGCCAGGCT TTTCACATCT ACTGTAGAAA 002160 002161 TACCACGTGT CACTGTGACT CTCCAGTTCC ACAGTCAGTG GCAACACATG GGCAGCTGGA AATCAGCCAC GGTGAGTGCA 002240 002241 TGTGCACCGT GGAAGTCGGC AAACACTAGA ACCAGGGCCC TGCTGACAGA CGTGTATGGG CACAGCACTG AGCAAGAGGT 002320 002321 TGCTGACCAC GGCCTCGAGC TGCCTTTGCC CACCTCGGAC TGTGCTCCAG GCACCCGGCC CTCCCAGCAG GTGGCTGCCC 002400 002401 TCTCACCTCC CTCGTGAAGT GTTTCTTCGC TTTTTGTTTT GTTTTCTTTT TGTGGTTTGT TCTGTTTTGT TTGGTTTTGT 002480 002481 TTTGGGACGG TCTCGCTCTA CACCCCAGGC TGGAGTGCAG TGGTGTGGTC TCGGCTCACT GCAACCTCTG TCTCCTGGGT 002560 002561 TCAAGCGATT GTTCTCCCTC AGCCTCCTGA GTAGCTGGGA TTACAGGCAT GTGCCACCAG GCCCGGCTAA TTTTTTTTTT 002640 002641 TTTTTTTTTG AGACAAGGTC TCCCCTCGAC TGGACAAGGC GGTTAGGGCA AAGGTCTGCC AGTCTTGCAG AGAAAGCAGC 002720 002721 CCAGGAGGCC AGGGAGGGCC GGAGGGATGC AGCACCCCCT GGGGCCGTCC TAACTGTGCG GCCCTAGGCA AACTACTGCA 002800 002801 AGTCCCAGCC TCAGCTCATG GGGACGCCTG GCAGACAGCC CTGGAGCAGG GACTGGGCAC CAGCTGGGAA GGGGCTGGTC 002880 002881 CCCACAGGCT CTTCTGGGGT CTGCCCCAGA ACCCCCTGTC ACTATGGGTC TTGCGAGGAG CCCGGAGACC TTAACTCTGA 002960 002961 AGTTGAGGAT GGAGCACGGG GCAGGTCACC TTCTTCTCGG TTCCAAATCC CCTGCTTGTT TCTAAGAAAC AGCTAATGAA 003040 003041 ACCCAGAGTG TCACAATGGC CTTCCCAGAG CTCCAGGAAG TCGCTATAAC TTGGGAACTC CTGTGACGGA GGCTAAGTGA 003120 003121 CGGGCCGTTA GTTTCTGTCT CTAGAAATAG CCCAGAACGG CTGGGCGCGG TGGCTCATGC CTGTAATCCC AGCACTTTGG 003200 003201 GAGCCCGAGG TGGGCGGATC ACGAGGTCAG GAGTTCGAGA CCAGACTGAC CAACACAGTG AAACCCCGTC TCTACTAAAA 003280 003281 ATACAAAAAC TAGCTGGG |
Predicted Small Protein
Name | NONHSAT144842_smProtein_1439:1699 |
Length | 87 |
Molecular weight | 9595.6872 |
Aromaticity | 0.0813953488372 |
Instability index | 60.6011627907 |
Isoelectric point | 5.11456298828 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0411097371882 |
Amino acid sequence | MNTQNSENSSLPGLVQWLTPVIPTLWEAWEDHLSPGVPDQPGQHVKTPSLQKNIKINWAW WYVPVVPATQEAEVGGSPELGKSRLQ |
Secondary structure | LLLLLLLLLLLLLLLEELLLLLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEEEEEEE EEEEEELLLLEEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |