NONHSAT144842

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT144842

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

3298 nt

Genomic location

chr17+:1481377..1489848

Exon number

5

Exons

1481377..1483747,1483764..1484054,1484625..1484729,1487621..1487670,1489368..1489848

Genome context

Sequence
000001 TCCCTGAAAC ACCCAGCAGA AACCCTGGTA CCTGTCCCCT GAAGCAGGAA GATGAGCCCT TCTGGGACAG GCTGACCCTG 000080
000081 CCTCAGAGTC TCAGTCCCAC CAGCAACCTC CCCCCGGCCA TTCCCACACC CTCGCCCACC AGGCCACCTG CGGCTTCCAG 000160
000161 GACTTACACG GCAGCGTACA GGCCCCCGAC AGCGGAGTGG ATGAATCCTC GCACGATTGT GTGCAGGATG AAGGAGAGGA 000240
000241 TCTGGGGGAG GAAAAGGCGA CTGTGGGCAT AAGGCCTTAA GGGACCGTCC CCTCAGCCCC CGCCCTCCAA TTCCTGGGGG 000320
000321 CCCTCACCCC AGGGGCAGTG TCAGCCTGGA GTTGGATCAA CCCCATCCTC CGGAGCCAAT TGTGAATTTT CAGAAATTTT 000400
000401 GCAAGCCAGT CGTTAACACA GTCATTTTTT GTTTGTTTGT TTGTTTTGTT TTTTGTTTTG TTTGAGAAGA AGTCTTGCTT 000480
000481 TGTCGCCCAG GCTGGAGTGC AGTGGCGTGA TCTTGGCTCA CTGCAAGCTT CGCCTCCTGG ATTCAAGCAA TTCTCCTGCC 000560
000561 TCAGCCTTCG GAGTAGCTAG GATTACAGGC CCACGCCACC ATGCCCGGCT AATTTTTGTA TTTTTTAAGC AGAGATGGGG 000640
000641 TTTCACCATG TTGGCCCGGC TGGTCTCAAA CTCATGACGT TGTGATCCAC CCGCCTCAGC CTCCCAAAAT GATGGGATTA 000720
000721 CAGGCATGAG CCACTGCGCC CAGCCTAACC GAGTCATTAT TAAAAATTAA ATTATAGGCT GGGCAAGGTG GCTCACGCCC 000800
000801 GTAATCCCAG TGCTTTGGGA GGCCGAGGAG GTGGATCACC TGAGGTCAGG AGTTCGAAAC CAGCCTGGCC AACATGGCGA 000880
000881 AACCCTGTCT TTACTAAAAA TACAAAAAAT TAGCTGGGCG TGGTGGTGGG CACCTGTAAT CTCAGCTGCT TGGGAAGTTG 000960
000961 AGGCAGGAGA ATCGCTTGAA CCAAGAGGTG GAGGTTGCAG TGAGCTGAGA TCACGGCATT GCACTCCAGC CTGGTGACAA 001040
001041 AGTGAGACTC TGTCTCAAAA AAAAAAAATA ATAATAATAA TAATAATTAA ATTATAAGCC GAGAATGGTG GCTCACACCT 001120
001121 GTAGTCCCAG CACTTTGGGA GGCTGAGGTG GGTGGATCAT ATGAGGTCAG GAGTTTGAGA TCAGCCTGGC CAACACAGTG 001200
001201 AAACCCCATC TTTACTAAAA ATACAAAAAT TAGCCGGGTG TGGTGGCGGG CGCCTGTATT CCCAGCTACT CAGGAGGGTG 001280
001281 AGGCAGGAGA ATCGCTTGAA CCGGGGAGGC GGAGGTTGCG GTGAGCCGAG ATAGCACCAC TGCACTCCAG CCTGGGTGAC 001360
001361 AGAGCTAGAC TCTGTCTCAA AAAAAAAAAA ATTACATAAA TTTATGACTA AATAAATAAA TTATATTAAA GTAAAGGTAA 001440
001441 TGAATACTCA AAACTCTGAA AACTCATCAC TTCCTGGCCT GGTGCAGTGG CTCACACCTG TAATCCCCAC ACTCTGGGAG 001520
001521 GCCTGGGAGG ATCACTTGAG CCCAGGAGTT CCAGACCAGC CTGGGCAACA TGTCAAGACC CCATCTCTGC AAAAAAATAT 001600
001601 AAAAATTAAC TGGGCTTGGT GGTACGTGCC CGTAGTCCCA GCTACTCAGG AGGCTGAGGT GGGAGGATCA CCTGAGCTCG 001680
001681 GGAAGTCAAG GCTGCAGTGA GCCAAGATCC CACCACTGCA CTCGAGCCTG GCTGATGGGA GTGAGACCCT GTCTCAAAAA 001760
001761 AAAACAAAAT GAACGAACAA AACCATGGAA AACCTCATCC CTTCCTAATT ATTTTACTTG GTTCACTAGA GCCTGTGCAC 001840
001841 GCATCAGGCT TTCCTTTTTT TTTTTTTGGA GACAGAGTCT TGCTGTGTAG CCCAGGCTGG AATGCAGTGG CACGGCTCAC 001920
001921 TGCAAGCTCC GCCTCCTGGA TTCAAGCAAT TCTCCTGCCT CAGCCTCCCT AGTAGCTGGG ATTACAGGTG CATGCCACCA 002000
002001 AGCCCGGCTA ATTTTTGTAT TTTTTGTAGA GACGGGGTTT CACTAGGCTG GTCTCGAACT CCTGACCTCA GGTGATCCAC 002080
002081 CCGCGTTGGC CTCCCAAAGT GCTGGGATTA CAGGCGTGAG CCACCGTGCC CGGCCAGGCT TTTCACATCT ACTGTAGAAA 002160
002161 TACCACGTGT CACTGTGACT CTCCAGTTCC ACAGTCAGTG GCAACACATG GGCAGCTGGA AATCAGCCAC GGTGAGTGCA 002240
002241 TGTGCACCGT GGAAGTCGGC AAACACTAGA ACCAGGGCCC TGCTGACAGA CGTGTATGGG CACAGCACTG AGCAAGAGGT 002320
002321 TGCTGACCAC GGCCTCGAGC TGCCTTTGCC CACCTCGGAC TGTGCTCCAG GCACCCGGCC CTCCCAGCAG GTGGCTGCCC 002400
002401 TCTCACCTCC CTCGTGAAGT GTTTCTTCGC TTTTTGTTTT GTTTTCTTTT TGTGGTTTGT TCTGTTTTGT TTGGTTTTGT 002480
002481 TTTGGGACGG TCTCGCTCTA CACCCCAGGC TGGAGTGCAG TGGTGTGGTC TCGGCTCACT GCAACCTCTG TCTCCTGGGT 002560
002561 TCAAGCGATT GTTCTCCCTC AGCCTCCTGA GTAGCTGGGA TTACAGGCAT GTGCCACCAG GCCCGGCTAA TTTTTTTTTT 002640
002641 TTTTTTTTTG AGACAAGGTC TCCCCTCGAC TGGACAAGGC GGTTAGGGCA AAGGTCTGCC AGTCTTGCAG AGAAAGCAGC 002720
002721 CCAGGAGGCC AGGGAGGGCC GGAGGGATGC AGCACCCCCT GGGGCCGTCC TAACTGTGCG GCCCTAGGCA AACTACTGCA 002800
002801 AGTCCCAGCC TCAGCTCATG GGGACGCCTG GCAGACAGCC CTGGAGCAGG GACTGGGCAC CAGCTGGGAA GGGGCTGGTC 002880
002881 CCCACAGGCT CTTCTGGGGT CTGCCCCAGA ACCCCCTGTC ACTATGGGTC TTGCGAGGAG CCCGGAGACC TTAACTCTGA 002960
002961 AGTTGAGGAT GGAGCACGGG GCAGGTCACC TTCTTCTCGG TTCCAAATCC CCTGCTTGTT TCTAAGAAAC AGCTAATGAA 003040
003041 ACCCAGAGTG TCACAATGGC CTTCCCAGAG CTCCAGGAAG TCGCTATAAC TTGGGAACTC CTGTGACGGA GGCTAAGTGA 003120
003121 CGGGCCGTTA GTTTCTGTCT CTAGAAATAG CCCAGAACGG CTGGGCGCGG TGGCTCATGC CTGTAATCCC AGCACTTTGG 003200
003201 GAGCCCGAGG TGGGCGGATC ACGAGGTCAG GAGTTCGAGA CCAGACTGAC CAACACAGTG AAACCCCGTC TCTACTAAAA 003280
003281 ATACAAAAAC TAGCTGGG
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Predicted Small Protein

Name NONHSAT144842_smProtein_1439:1699
Length 87
Molecular weight 9595.6872
Aromaticity 0.0813953488372
Instability index 60.6011627907
Isoelectric point 5.11456298828
Runs 9
Runs residual 0.0349704963554
Runs probability 0.0411097371882
Amino acid sequence MNTQNSENSSLPGLVQWLTPVIPTLWEAWEDHLSPGVPDQPGQHVKTPSLQKNIKINWAW
WYVPVVPATQEAEVGGSPELGKSRLQ
Secondary structure LLLLLLLLLLLLLLLEELLLLLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEEEEEEE
EEEEEELLLLEEEELLLLLLLLLLLL
PRMN -
PiMo -