NONHSAT004924

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT004924

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1824 nt

Genomic location

chr1-:106144774..106161580

Exon number

4

Exons

106144774..106146180,106146785..106146887,106148557..106148711,106161397..106161580

Genome context

Sequence
000001 AATACAGGAG TGTTTATGGT TGGGTTGAGA CACATTCAGT AGCTGAGTGA TTGACAGCAA GAGGAGCAAG ACATGAGGTA 000080
000081 GATTTGTATT ATATTCTCAG TGAAACGGGA TAGCTTTAGA AGCTTTTTAA TAAAAAGGAT ATATGATCTA AATTTCCTAC 000160
000161 TGTTAATAAT TATCAAATAT ATGGCAATGC TGGACTTTAG CTGATCATCG TGCTTCTGGA AAACAACAAA AATTGAGATA 000240
000241 TCTGTTCACC ACTTTGTGTG TCCAAGGACC ACCTACTTTT TACATGTGAC AAGAACTACC CACCTCCACT CTTCAGGATA 000320
000321 GAACATGCTG AAGAAAAGAG TTGCAATGAG AAAATATATG GGAACAAAAT ACCTATGCAA TGCAGAAGTC TGCATAACTG 000400
000401 AACCACTCAG AGGAAAAAGT TTCCCTCCCA GGCTGGAGTA CAATGGCGCG ACCTCGGCTC ACTGCAACTT CCACCTCCCA 000480
000481 GTTCAAGCAA TTCTCCCACC TCAGCTTCCT TAGTAGCTGG GATTACAAGT GCCTGACACC AGGCCAAGCT ATTTTTGTAT 000560
000561 TTTTAGTAGA GACGGGGTTT CACCATTTTG ACCAGGCTGG TCTCAAACTC CTGACCTCAG TCCATCGGTC CACCTCGGCC 000640
000641 TCCCAAAGTG CTGGGATTGC AGGCATGAGC CACCGCTCCT GGCCTCAAGT TTAATTCTTA AGTGAGTCAA TCAGTTATAG 000720
000721 TTCTGTTCAA AGCTTTCAGT GCACCTAAAA TTTCATCCAA CATCTATTAT CTTTCATCAT ATGCTAAAAC AGCTTGAAGA 000800
000801 TGTATATGAT TTTATAAAAA ATAATCTATA AAACAAAACA ACCAAATTAA GGGTTTACAT TTTAAAGCAC CAATATTCAC 000880
000881 CTATAGTTGG TGAATGTACA GTTAGAATGA AAAAAAATAG AATTTTGGTG AATTCTGAAA TGGTTCCACC CTATCCAAAC 000960
000961 AAGTTGTATT AATGCATGTA TACATTTCTT AATAGATAAA GTACTCGAAT TGCTACAAAT ACAGAAGCTT ACAAGTTTCC 001040
001041 AGTGAGAATA GGCTCTGTCA AAAACTTTGC TGTATATTGA TTAATTTTGT TACTATAAAA CAAAAAGATA TCTTTCAATT 001120
001121 GAAAAATATC AAATGCAAAG TTTTGAATTA TAAAAGCAGC TTCAAGCAAA TAATAATTTT TACCCAGCAT CAAAATTTAC 001200
001201 ATATTTAAAG GGCATAAGCA AGCATTGGGC ACAGATAAAG CATTCTTTTC CCGGAGGATC CCAAAACCAA CAGACGGAGC 001280
001281 AACAAAAACT CATTTTCCTC CTATATTAAC ATGTATTTCA ATTTTGGATT AAGAAGTTTT GACAATGTGT GCAGAAACAC 001360
001361 AATTCACAAA AGGAAACTAT TATGGTTTTG GAGACTTTTT CTTTTATATA CTGTTGATTG CATTGAGAAA AAAATTATTT 001440
001441 ATGGGCTTCT CCCTATTTTC AAGCCAGCCA GCTATCCTAA ATTCATATGT TTTATTTTAA ATTATAACAA ATCAAGACCA 001520
001521 TGATATTATC GTCTGCTCCA GACAACAGCC TTTCCCTAGT TTATACCATT AACATTTTAT TAATGGTATT TATATTTGGT 001600
001601 ATTAGTAGGA GGTCATTATA ATTTTACAGG AATGTCTAAT TGAGATAATT AATTCACTCT TTTATGTTAA TACTTTTCTA 001680
001681 CCTAGCATCA CATAAGATAA TGGAGGTGTG ATTTTTTTCA GTAATTTTTG CTAGTTTAAT AAATGACTTA ATCCTCCTCA 001760
001761 TCCATATTCA TTTTGAAATT ATACTTAGTA TTTTAATATA AAAGAATAAG ATAGCATAAT ACTG
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Predicted Small Protein

Name NONHSAT004924_smProtein_1310:1522
Length 71
Molecular weight 8615.2565
Aromaticity 0.214285714286
Instability index 50.5771428571
Isoelectric point 9.89801025391
Runs 7
Runs residual 0.0448373408769
Runs probability 0.0681101269336
Amino acid sequence MYFNFGLRSFDNVCRNTIHKRKLLWFWRLFLLYTVDCIEKKIIYGLLPIFKPASYPKFIC
FILNYNKSRP
Secondary structure LEELLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLEEE
EEELLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL
LLLLLLLLLL
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