NONHSAT139913
Revision as of 09:26, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139913 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1467 nt |
Genomic location |
chr1+:169455380..169456846 |
Exon number |
1 |
Exons |
169455380..169456846 |
Genome context |
|
Sequence |
000001 GGACATGTGG AACTCCACTC CAAAAGCGGC GGCTTGCGGC GGAGCTCTCT CTAGTGAGGC GGCCAGCTGG CGTTCGTGGC 000080
000081 ACACTTGCTG TCGGCTCCGC TCATCTGTTG GGAATGCGTC CTGTGGGCCT AGTCCTCCGC TGGAAGAAAC GCGCTGTTCT 000160 000161 CCCCAACCAC CGTTTATCAT TCTTATTCAC CGTCTCCGGA ATGTCCATTC AGTTTCCGCT CCTGAGAGAC TTAGTGACTG 000240 000241 AGGCCAGGCA AAGATTTCAC CTTGGGGAGG GGGAACGTTA AACCTTTCCT CCAGCAGCTT TCGTGTTTTA AATTGTATTC 000320 000321 ATCCGCCATG GAAAGACATC AGAAGCCCAG GATCTAAGAG ACAGACTGAA ATGAAGAAAG TAGATAATAT TGTGAGAATA 000400 000401 ATGAACAAGC TGGTCACTGA ACAGCAGAAC CGTAATGGAG TCCCAGTTAA AGGGTTTTAA CTTTATTTCG TCACTTTTTG 000480 000481 CAAGCATGAT ACAAAGAAAA CAAACACCTA ACTACGCTAC GGTTTATAGT TAAAAGGAAG GTGGAAGATC CTGAGTCATT 000560 000561 ACAGCAATCA CAAAACATGA TGGATTTCTT CATTTAAAAA CACAAAAGAG GTCTTGGCAT AGTTTTCAAG GGCAAAGCAT 000640 000641 GACAAGACTC TCCAGTGCTT TCTTTCATCC CCCTCTGTGT GCCTTTTTCT GCCTGACTCA CAGCCTGGCT CAATCCTAAT 000720 000721 CTTTCTACTG CAAAGATGCA GCATTTAAAG CAATTTTTCC TGTGCAGTAT TTGTAGAATG ACAGATCCTG CCAGAAGCTC 000800 000801 TTGGAAACAT TTTGGAACTA TCTTGCTTTT CTGTATGTTA TGATCCATCT AGCACCGTTT TCCTCCTGTG GTAGCAAATG 000880 000881 ACACTTTTTT CAAGCATCAG CAGCAGAAAT GAGTCTACCA GATGGAATAA GATACTGGTA AAGGGAAAGA TTTGTTTCTA 000960 000961 AGACTGCACA AATGAATGCA CCCAAATCTG TGAGTTGATT AATCTGTGAA GAAATACAAC TGGCAGTATT TACATATCTc 001040 001041 aatgagtctc aaagtgtggt cgaggaagcc ctgggggtcc ttgggaccct ttcagaggtt ccacgagctc aaatctattt 001120 001121 tcataaccat gctaagtctt tatttccttt tccactccag aggctatata atgtctgatg acatcatcgc tttataggat 001200 001201 gagagaatac gtgcttgtat attcttgtgt ttgtaagact ttccaggttt aatttattac catatggcaa ttttcaataa 001280 001281 gtataaccca caaaacccaa cagatttttg gggcacctct aacaagggtc ctaagaccaa aatgtttgag gactgctAAT 001360 001361 CGATATTATT CAATTGTCTA GTCCCCTAAA CTCCAACCCT TCTTATCAGG ACTACAGAGA GAAAACAGGT GGTCTTCTTG 001440 001441 ACAATCGCTT TGTATTTACA TTCAGTG |
Predicted Small Protein
Name | NONHSAT139913_smProtein_113:280 |
Length | 56 |
Molecular weight | 6460.5889 |
Aromaticity | 0.0909090909091 |
Instability index | 53.5927272727 |
Isoelectric point | 11.7855834961 |
Runs | 11 |
Runs residual | 0.0484848484848 |
Runs probability | 0.0403076873665 |
Amino acid sequence | MRPVGLVLRWKKRAVLPNHRLSFLFTVSGMSIQFPLLRDLVTEARQRFHLGEGER |
Secondary structure | LLLEEEEEEEELEEELLLLLEEEEEEELLLEEELHHHHHHHHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |