ENST00000433669.1

From LncRNAWiki
Revision as of 09:31, 13 October 2014 by 73.162.128.239 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000433669.1

Source

Gencode19

Same with

lnc-RHOB-4:6,NONHSAT069411

Classification

intergenic

Length

2472 nt

Genomic location

chr2+:20068652..20077296

Exon number

6

Exons

20068652..20068713,20069257..20069374,20070186..20070307,20072154..20072357,20072893..20073125,20075564..20077296

Genome context

Sequence
000001 TTTCTGCTCC TGTCGCCATG GCCCCGGCCT CGGCGCTCAA GCGACCCTCT CGCTCCGCCC AGACCCCTGG ATGCCCAGCT 000080
000081 GCCGCACCTC CCGTGGCCCC ACGCTGTGGC TACGTGTTGT CTGAAGACGC CTGGGGAAAC CTTCAGGGCC TCTGTACTGG 000160
000161 CCTGTCATGT GGTCAACCAG TGTGAACATC GAGGTGTCTG GGTTCATGGA AGCTGGTGAA GAAACCACCT ACAACTATAC 000240
000241 CATGTCCTGT CCCTATTTCA CATGGGCCTC GAGGAAGATT CTCTGAAGGG AACTACATGG AGATCTCCTT GATTGCACGG 000320
000321 TCAACCCCGC TCCTGTCTGT CAGGCTCAGG AACCACTTAC AAGCTATGGC AGGTGATGTT CCAGCATCCC ACAGGGAGGA 000400
000401 TTATGCTGGT GAGCCACATG GCCAAGCAGG ACTATGGCTT CAACAGCTCT GGGGCCTGCA TGTTCCTGCA TTAGCCCTAC 000480
000481 TCCAGCAATG AGGCTGAAGT TACCAGAGTG ACATCATGGT ATCTGGTGCA AGCTATAGCA TCCACCTATT CTTGGAGCAC 000560
000561 ACGTGGTCAG ACACTGATTG GCATGTGACC AAGTTGATGG TGGTCAAAAC AGAACTCCTT TCATGCCCAC AAGCTTCAGT 000640
000641 ATTACTATGT TCCCTGCCAC TTCCGTTGAA GTTTTGCAGG ATTGGGATGA TCCTTTGGTG TGAACGAAGC CCCAAAGAGG 000720
000721 ACCACGTGGA GAGTGCCTGA CTGTTCCTGT GATGTCTTCT AGTACATGAA CAGGAATGAA ACCCACTATG TCCTCCATGT 000800
000801 GAACTACATG CTGAGCGTGG GTCCAGATGG GAAACCATTC TCCTACCCTG CAGAAATGGT ATATAGTTTC AAGGATGTGG 000880
000881 GTAAGTACAC CAAGTGAGGT GCTGGTCCTG GACTCATGGA TGGTCTTGGT ACCCAACAAG TTACACTGGC TCTGTCCAAA 000960
000961 CAACAGCTGT GGAAGCCCCT CCCATGGGAG GGGGGTCCCA CTGGGGCTAC ACAGAAGTAA CTCCTCACAA GTGGCTTGTC 001040
001041 TGCATCCTGG GATTGGAAAC CCAGTATAGA AGCAGCTGTT GGCAGACTCA TGAAGTAATA CAGAGAATGG GTGGCTGCTC 001120
001121 ATACAATCAG CAGTAAGACT TCACTTAAAT CATGCCAGGA ATGACATGAA CAGGACTCAA CGTACCCCAT ACAGTCTTCC 001200
001201 CTCCCAGGTG CCACCACCCC TGAAATATTA ACCTTGGTAG ACTTCTCCTG TCAAGGTCAC AGTAAGGGTA GCCAGTGGTA 001280
001281 TCAAGACCTT GGTATAAATC AGACATGGCC TTCTTCCCAG CAAGGTCATT AGGTACCCAA TGTAGAGATA GCAGGGAAAG 001360
001361 GATATAAAAA CAGGAAAGTT CCAGGTGAGT CATCTTTTGC CCCTTGACTA GGCCTGCCTA TAGGTTTGAC AGCTCCAGGA 001440
001441 AGTAAGAAAA CAGGTATATT GTCTTCCTTC CTATAGCTCT GCTAGGTGTC ATCCTCTTAA GGTCACTAGG ATTCTAGTGT 001520
001521 TGAAGGCTTG CTGCCACACA GATGGCACTG TTCTATCCTC AAAGCATTTT CAGGGTGCCA TCTAATGGGT CTGAATCCTG 001600
001601 GTTCCATTGC AAACTTTAAG CAAGGAACTC AGCATTATCC AATCCCCATT TTCTCCAACT ACTGGCCCCC TCTAAGGAGG 001680
001681 CTGAAGAGTG AAAGCATGTT GAACACCAAG ATGCTCTCCA AAGATGGAGT CCTTCTCTTC TGAGCCCCAC AGCTCTGCAA 001760
001761 GATGGGTAAA ACTCAAGGTG GCATTAGGCT CTGAGAGGAG CTCCATCACA CAGCTGGCAT AGTATGGAGC TGGACCAGAG 001840
001841 CCCAAATCCC CTATCTCCCC ACTGTCCTAA CCAAAAGCTT ACACTTCAGA ACCCAAGGCC GTGAACACAG ACCTCACACA 001920
001921 GCTGTAACCT GAGAAACTGC CATTGCTGAT CTAGTGCCAG AACCACTTCC CCATCCCTGG CTTTCCTGCT GACTTCCCAC 002000
002001 GAGATAAGAC TTTTCTTTAA AAAGGGGGCC TTCTCAGCCA CACGCAGTGG ATCACACTGT AATCTCAGCA CTTTGGGAGG 002080
002081 CCGAGGCGGG TGGATCACTT GAGGCCAGGA GTTCGAGATC AGCCTGGCCA ACATGGTGAA ACCCCATCTC TACTAAAAAT 002160
002161 ACCAAAAAAA AAAAAAAAAA AAAAAAAAAA AGCAGGGCAT GGTGGCATGT ACCTGTAATC ACAGCTACCC AGGAGGCACA 002240
002241 AGAATTGCTT GAACCCAAGA TGCAGAGGTT GCAGTGAGCC TGTTTGTACC CCTGCACTCC AGCCTGGGTG ACACAGTGAA 002320
002321 ACCCTGTCTC AAAAAAAAAA AAAGGAGCCT TTGGCCAGGC ACAGTGGCTC ACACCTGTAA TCCCAGCACT TTGGGAGGCT 002400
002401 GAGGCGGGTG GATCACCTGA GGTCAGGAGT TTGAAACCAG CCTGGCCAAT ATGGTGAAAC CCTGTCTCTA CT
[back to top]

Predicted Small Protein

Name ENST00000433669.1_smProtein_515:739
Length 75
Molecular weight 8415.8054
Aromaticity 0.0810810810811
Instability index 43.9567567568
Isoelectric point 6.01116943359
Runs 12
Runs residual 0.019512195122
Runs probability 0.0825310604723
Amino acid sequence MVSGASYSIHLFLEHTWSDTDWHVTKLMVVKTELLSCPQASVLLCSLPLPLKFCRIGMIL
WCERSPKEDHVESA
Secondary structure LLLLLLLEEEHHHHLLLLLLLLLEEEEEEEEEEEELLLLLEEEEEELLLLLEEEEELEEE
EEELLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL
LLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTii
iiiiiiiiiiiiii