NONHSAT105112
Revision as of 09:47, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105112 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1022 nt |
Genomic location |
chr5-:171681422..171682443 |
Exon number |
1 |
Exons |
171681422..171682443 |
Genome context |
|
Sequence |
000001 AAGAATGCTC ATGTTTGACC CAGTTCCTGT TAAGCAAGAG GCCCGTGGAC CCTGTCTCGG TGTCATACTC ATCTAATTAC 000080
000081 ATGGAATCCA TGAAGCCCAA CAAGTATGGG GTCATCTACT CCACACAATT GCCTGATGAG TTCTTTCAGA CCCTAGAAGG 000160 000161 CCTGTGGCAT GGAATACAGA TGGAGCCAGT GGACTTCATG GTGAGCAAGC GGAGTTCACC TCCTTCTGCT GGGAATTTGC 000240 000241 ACCCCTCTCT CAAGTTCCTA TCCTCACACC AGAGAGCCTC GCCTGGGTTG AGCATGCCTT CTTCCAGCCC ACCAATGAAA 000320 000321 ATACTCATCC CCTTCTCCAG GCTGGCAGCC TTTTGACGTG CCACTTGTCC ATGCCGCAGA TGATGGCAGC TGCCCTCTCC 000400 000401 TGGCACAGAA TATGGAGCCT GGGGATCTTG CTGGTCATCC AGCCGGTGGT GGTGCAGCCC ATCCCCTTTA TGTACATGAG 000480 000481 TCACCTCCAG GAGCCTCTCA TGGTCTCCTT GAGGAGGAGG AGGAGGAAGA GGTCTTCCAT GGAGGAGATG AAAAATTCCA 000560 000561 GTAGTAGCAT GCAAGTACCT GTAATTGAAT CATAAGAAAA TCCTGTACCA GAGAAAAAAA TTAAAATAGA ACCTGGGATT 000640 000641 GAACCACAGA GGACGGATTA TCCTGAAGAA ATGTCACCCC CCCCTTAATG AACTCAGTGT TCCCCCCCAC AAGCATTGTT 000720 000721 GCAAGAGAAT CACCCTTTGG TCATCTTGCA GCCTGGGAAG AGACCTTTAC CTGTGGAATC CCCGGATACT CGAAGTGGAG 000800 000801 GATACACAGA TGTGATTACG ATGGATGCAA CAAAGTGTAC GCTAAAAGCT CCCACTTGAA AGCACACAGA AGACGACACA 000880 000881 CAGAAAAACC CTACAAATGT ACATGGGAAG GATGCACATG GACGTTTGCT CGGTCTGATG AACTAAAAAG ACATTTAGGA 000960 000961 AAACATACTG GAATCAAACC TTTACAGTGT CCGGACTGTA ACCGTAGCTT TTCCCGTCCC AA |
Predicted Small Protein
Name | NONHSAT105112_smProtein_80:355 |
Length | 92 |
Molecular weight | 10123.6241 |
Aromaticity | 0.0989010989011 |
Instability index | 67.0538461538 |
Isoelectric point | 9.22320556641 |
Runs | 11 |
Runs residual | 0.0125915750916 |
Runs probability | 0.0276452923512 |
Amino acid sequence | MESMKPNKYGVIYSTQLPDEFFQTLEGLWHGIQMEPVDFMVSKRSSPPSAGNLHPSLKFL SSHQRASPGLSMPSSSPPMKILIPFSRLAAF |
Secondary structure | LLLLLLLLEEEEEELLLLHHHHHHHHHHHHLEEELLLLEEEELLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLEEEELLLLLLLL |
PRMN | - |
PiMo | - |