ENST00000563515.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000563515.1

Source

Gencode19

Same with

lnc-PRDM7-2:2,NONHSAT144647

Classification

intergenic

Length

416 nt

Genomic location

chr16-:90182608..90192430

Exon number

2

Exons

90182608..90182970,90192378..90192430

Genome context

Sequence
000001 AGATCAGACT TTGTGTGTAA CTCCACTAGC CTACCAGGGT GCCTCTCATA AAGATGAATT TCTTCCTCTG CTGAGTGCTC 000080
000081 TAAAGACTCA CTCCTTGGCA CTCAGGGCCG TGGACAGGAG CTTTTTACTC ACCAATGAAG AACACCAAAT TAACACGACC 000160
000161 CCCGTGCTGC CCTGAGGAAG TTGAAGCTCC TCGCTGCTTC TGGCACTTCA GCGGGAAGTT GGTTGGGGCG GGATCGCGCG 000240
000241 CCCTCTGGTG GCGCCATGGT TCAGCACAGA CGCTCTTGCT CACAGTTTCG CGGCGGATGT GCGCCCCCTC CTGGCTGTCC 000320
000321 TGAAATACCT ATAAAATTCA ATATTCAGTT TATTCAGTGT CATAATTTTG GAAATTCAAA CCGAAATAAA GGCCAGTATA 000400
000401 TCCATACCCT TCCCAT
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Predicted Small Protein

Name ENST00000563515.1_smProtein_134:322
Length 63
Molecular weight 7043.1959
Aromaticity 0.0967741935484
Instability index 50.7322580645
Isoelectric point 9.92706298828
Runs 12
Runs residual 0.0399078341014
Runs probability 0.0166637225461
Amino acid sequence MKNTKLTRPPCCPEEVEAPRCFWHFSGKLVGAGSRALWWRHGSAQTLLLTVSRRMCAPSW
LS
Secondary structure LLLLLLLLLLLLLLLLLLLLLEEEELLEEELLLLHHHHHHLLHHHHHHEEELLLEELLLL
LL
PRMN -
PiMo -