NONHSAT084594
Revision as of 09:48, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT084594 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1680 nt |
Genomic location |
chr22-:28071552..28093699 |
Exon number |
5 |
Exons |
28071552..28072206,28072385..28072886,28073331..28073576,28085718..28085883,28093589..28093699 |
Genome context |
|
Sequence |
000001 GACCGTCTGG TACCAGGAAC TGGCCAAATG TGAAGGTGTA AAACACAAAG TTCACACCCT GAAGAACCTT CTAGTCCAGT 000080
000081 CGGGGAGATG GACCCAGAAT GTCAGATTAA GATTGGCCTG CATCAGCCCA AATGGTTCCA TGTTCTTCTT TTTAATGGCT 000160 000161 GCATAGTACT CCTTTGCATG GATGCACCAC AGTTCATTTA ACCAGAGTCC TGTTGGCAGG CATTTCAGAT GTTTGCAATT 000240 000241 TTTCTGTGAG ACCAACACCA CTGTGATCAG CATCCTGTTC TCCTTGAGAG TCTGTGTCAC TGTATCCAAA TCTCTCTCCT 000320 000321 TTTTCTCCTA GAAAGTCACA AATCACTACA TAAGGACCTG CTGTAACCAG TCTGACCTCA TCTTGATTAC AGCTGCAAAG 000400 000401 ACCCTATTTC CAAATAGAGC CACATTCTGA GGATCCAGGG TGACAAATTT TGGGAGGATA ATATTCCATC TGGCACAGAA 000480 000481 GGGAAAAGGG AAGTTTTTGT CTGAAGAAGG GGCTTGTCTG GAGAGTTGCT GTGTGAAAAG TCCAGGCTAG CCTGCTGGAG 000560 000561 GATGAGTGAT GGGTGAAGCA GAGATGAATT TTCAGAGCTG GCTTCATCTG AGACCAGCCA GCCCTAGCTG TGGAAGGCAG 000640 000641 ACACTTAGCA AACCCAGCCA AGATCAGCCA AGCCCATCCC AGGGCAGAAG AACCACCAAG CTGATCCCAG TCCACATCTA 000720 000721 CTTCTGGAAG CACGTGCTAA ATAAATGGTT GCTGTTTTAA GCCACTGAGC TATGGGAGGC TTTGTTTCCC AGCAATAACT 000800 000801 AATTGATAAA TCATCAACAG TAAAATGGAT AAATGAATTG TGGTACAGGC ACACGTGGAA TGAAAAACAT TAAGGAGAAT 000880 000881 AAATAAACTA CTGCTACACA AGACAACATG GATGAACCTC ACCAATACTA AGCCGGGTGA AGGAAGCTCA GCAGGCAGAG 000960 000961 TGCATCCTAC AAGATGCCTT TTATAGAAAA AGTACAAGAA TAGGTGAGAG TAATCTATGG AGAGAAGTTG CTGGAGAGCC 001040 001041 AGTGGGATTG CATCTTTTGC AGAGGACAGG TCCTTAAGGG CAAAATCGCT TAAGAGTCAA AATGGCCTTG AAAATTCCTT 001120 001121 GGGAAGCCGT CATGTTGGAG CCAACCACTA TTTCTCAATA ATTTCAGCAC AGCCAGTTTT TCCTCCTGCG TTGGGACGGA 001200 001201 TCGCTGTTTC TCCTGTCAAG CTCCAGATAC AGTAAAGTCT TGTGTTTAGG GGCCACACAG TGGAGTGGGA CACTCACAGG 001280 001281 CAGAGGGAGG AACCAGGTGC TCCTACTCAG AGACACGTGG GACCCAACGG GAGGGTTTGG CTTGGAAGAG ACACCTTCAA 001360 001361 AGTGAGTGGT GTGGGGATTT CCCCATCATA TAATGTCCCC TTTGGGGTGT GAGGGGCAAA TGTGTTTAGT TAAGTGGATC 001440 001441 TTAACTCAGT TAAATTAAAT TCATGTATGA TGTGAGACCA GCGTGGAAAG GTCTTACCTC TTGATTAACC AATTGTTCTT 001520 001521 CCCCAGTCAC TCCATTGCTC CTCTTTGAGC CATCCAAAAA GTCACCTCAT CTTTCCAGAC CTCAGGGTCC TCATCTGTAA 001600 001601 ATTGGGGGGC ATGTGGACTT GGACAGAATG GGCCCTCTCT GTCACTTGGA GAGTCTGGGA TTGTAAGCTG CCCTCCGGGA 001680 |
Predicted Small Protein
Name | NONHSAT084594_smProtein_1016:1234 |
Length | 73 |
Molecular weight | 7837.8708 |
Aromaticity | 0.0694444444444 |
Instability index | 66.6111111111 |
Isoelectric point | 10.4135131836 |
Runs | 11 |
Runs residual | 0.0118613138686 |
Runs probability | 0.0305117952177 |
Amino acid sequence | MERSCWRASGIASFAEDRSLRAKSLKSQNGLENSLGSRHVGANHYFSIISAQPVFPPALG RIAVSPVKLQIQ |
Secondary structure | LLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLLLLLLLEELLLLEEEEEELLLLLLLLLL EEEELLLEEEEL |
PRMN | - |
PiMo | - |