NONHSAT105456
Revision as of 09:54, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105456 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1571 nt |
Genomic location |
chr5-:177139134..177145570 |
Exon number |
5 |
Exons |
177139134..177140171,177140749..177140917,177141070..177141178,177144164..177144297,177145450..177145570 |
Genome context |
|
Sequence |
000001 ATTTAGAGGT TTATTTCGAA CAACTGGCAA TTCCAGGAAT GATGGAATAA AGCATACGAA GTAGAAGGAC TGGAACCTCC 000080
000081 AGAAAAAGTA CTTTAAGTTA CCTACAGGTG ATCCTAGTCA GGCAAATGAA AACAGTAGCC TAAAGTGTCA GTTTCAACCC 000160 000161 GAAAATAACA GCTCTGATTT CTCATGGCTC ACACTCGTCT GAAATGACTC GGGTAGAGGC TGAGGAAGGC TGTGTTGTTT 000240 000241 GTCTACCTGG GACTAGTAAA AAGAGAAGAG AAAGACATTC TTGATTTTGG TGACTAGAGT TGTAGATGCT GGAAGCTTTG 000320 000321 CCACTAACAT TGATGAACCA GATGCATGTC ACCAGCCCAT CACGGGCACC ATGGGCCGGC ACTGCCACGT TTTCCAAGGA 000400 000401 ACCTGCCAGA GCTCCTGCGG AAGCTGCTCC TCGGGCGATG GAGTCCCTTT GCTGCTAGGC CCTTCTTCAG TCACCACAGG 000480 000481 ATGCCTGCCA TTCATGAACA GGAAGGAGAG GACGGGCTTT GAATAAAAAA CAGGATCCAG GAAATATTTG TGAGGCCATT 000560 000561 TGGACTTCAG TGTGAAATGG TGTTAAAAGA TGAAGTCATT TATTCAAGAA GTAAACCTCT GCCACCTGGA CTGTGCTCAG 000640 000641 ACATTTCATT GATTTTGTTT AATAAACATT TTCTGGCTTT GGGAGGTGTC TCTCTTGGTA GAGCACAGTG TCAAAGATGG 000720 000721 ACAAGATGGA CACATAGTCC ATTATTTGGT ATTGTTTGTG TATGGGAGCG GACCACAAAT TAATGTTTGG AGAACAATTT 000800 000801 TGTCATAACA CACTGTTGAG GCTCAGTTGT ACAGAACTGG AAAAGTCTTT CAGCTTGGCA CATGTCCTGA TTCAGCCTTT 000880 000881 GTTTAACATA CATTCCAATC CGGATTCTAT CTTCACTGGC TACAAAGACC ACCTGATACG TGCACCACGA CACAGGAGCT 000960 000961 GCTGGAGAGG GGGTAGTGTT ATCACCTCAA ACCCACAGCC ATATttttca aaagccagct tagagagagg tgtactgata 001040 001041 gctgcataga gaacatgcag tccatccatt cttcCCAGTG ATGTACATTT CTCAATCAGT AACCACGTGG TATACCAGCC 001120 001121 TTGAGTGTCA CATCTCCCAA CCATACCAAA TGGATCACCT AACTGGAGGT GGGGGGGGCC CCTCAGAAAT GAGATTTCGT 001200 001201 ATTTACTGTA AAATTGCCTT Attttttctt ttgaggtgga gtctcactct gttgcctggg ctggagtgca atggtgtgat 001280 001281 cactgctcac tgcaacctcc gcctcctggg ttcaagcagt tctcctgcct cagcctccca agtagctgca attacaggcg 001360 001361 catgccacca ctcccagcaa atttttatat ttttagtgga gacagggttt caccatgttg gccaggctgg tctcaaactc 001440 001441 ctgacctcag gtgatctgcc caccttggcc tcccaaagtt ctgggattaa aggtacgagc caccgcaact ggcTgagaat 001520 001521 ctttttattt gctgatttgt ctcttgtgta ttttctttgt tcagatgtct c |
Predicted Small Protein
Name | NONHSAT105456_smProtein_761:1048 |
Length | 96 |
Molecular weight | 10711.2025 |
Aromaticity | 0.0947368421053 |
Instability index | 49.3694736842 |
Isoelectric point | 8.98773193359 |
Runs | 17 |
Runs residual | 0.0498963945296 |
Runs probability | 0.0373920633437 |
Amino acid sequence | MGADHKLMFGEQFCHNTLLRLSCTELEKSFSLAHVLIQPLFNIHSNPDSIFTGYKDHLIR APRHRSCWRGGSVITSNPQPYFSKASLERGVLIAA |
Secondary structure | LLLLLLEELLHHHHHHHHHHHLLHHHHHLLLHHHHHHHHHHHLLLLLLLLLLLLLHHHHL LLLLLLLLLLLEEEELLLLLLLLLLHHHLLLEEEL |
PRMN | - |
PiMo | - |