NONHSAT033775
Revision as of 10:12, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033775 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1221 nt |
Genomic location |
chr13+:50554204..50555424 |
Exon number |
1 |
Exons |
50554204..50555424 |
Genome context |
|
Sequence |
000001 agccaagatc gtgctactgc actcctgcct ggtgacaaga gcgagactcc gtctcaaaaa aaaaaaaaaa aaTCATTATT 000080
000081 ATTTCACATG TGCTTTATAT CTTATGTTTT GATTTATTTT TAATCAGCAG GGGTTTGTAA TTTCAGCTTT TAGTTACTCC 000160 000161 TGCTATTAAG TATTGAATGG ACAAACACTA CTTAAAACAG TGTTACACTT CTTTTGAAAT ATGAGGAATC CTTTTATTTA 000240 000241 TCTGTGTGCA AATAACATGT TTCAACACTA CTGTTAAGTA TTCTGTTAAA GTACAAGTCT ATCCCTTAGG AGGGGAGGGT 000320 000321 ACACTCTACA AGAAGTTTTT TTCCCCAGTC TCTATGGGGT GGTTATTTCT GTAATCCTAT TTATGGATGA AGCAGGGGAA 000400 000401 ATACAGTCAT CACTGGGGCa atgataagag ctactgtgca ctgagggttt accatgtgcc tgtcagtatg ggcagtctat 000480 000481 atcctctacc tccttcctca cagagatccc atggtggggg ggcccagtta ccctcatttt acagaacagt aaacaggctc 000560 000561 agggagattc agtattgagg ccccaagcct ggaagttatc ctccatttct cttttcctct ttggcccctc ctccaattta 000640 000641 ttaacaagtt ctgtcagcta taactccaaa atatattttt aaaatatgac cttttttcct accctagctc aagtcctcat 000720 000721 tatctttctt gcttagatgt cgcattagcc tccaaactgt cccccggggc cactcttacc cttagtacca tcttccttcc 000800 000801 acacaatggg cagggtgggt ttttttagtt gttgttgttt gtttgttttt tgagacaggg tctaagtcta ttgcccaggc 000880 000881 tgcagtgcag tggtgtggtc atagctcatt gcagcttcaa tctcctgggc tcaagtggtc ctctcacttt agcctttcaa 000960 000961 gcagcttagg ctacaggtgc ataccaccac acctggctaa tttttaattt tttgtagaga tgcagtcccg ctatgtttcc 001040 001041 taggctggtt ttttgttttg ttttgttttg ttttctgaga tggagtcttg ctcttttgcc caggctggag tgcagtggtg 001120 001121 tgatcttggc tcactgcaac ctctgcctcc cgggttcaag tgattttcct gcttcagcct cctgagtagc tgggactacc 001200 001201 agcgcccacc actatgcctg g |
Predicted Small Protein
Name | NONHSAT033775_smProtein_386:577 |
Length | 64 |
Molecular weight | 7238.1306 |
Aromaticity | 0.126984126984 |
Instability index | 56.0461904762 |
Isoelectric point | 9.91656494141 |
Runs | 7 |
Runs residual | 0.0338516358925 |
Runs probability | 0.0238726121079 |
Amino acid sequence | MKQGKYSHHWGNDKSYCALRVYHVPVSMGSLYPLPPSSQRSHGGGAQLPSFYRTVNRLRE IQY |
Secondary structure | LLLLLLLLLLLLLLLEEEEEEEEEELLLLEELLLLLLLLLLLLLLLLLLHHHHHHHHHHH HLL |
PRMN | - |
PiMo | - |