NONHSAT106576
Revision as of 10:17, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106576 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2092 nt |
Genomic location |
chr6+:1976469..1994306 |
Exon number |
10 |
Exons |
1976469..1976625,1977093..1977153,1977269..1977360,1977484..1977544,1977665..1977778,1977962..1978063,1990010..1990055,1991811..1991882,1992403..1992646,1993164..1994306 |
Genome context |
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Sequence |
000001 GTCTTCAACT GACCAATATT TGAAGAACAA TGTGCTTATT CTGCTCCATT TGGAGGAGGC CAATCTCTTG AGAAGCAAAT 000080
000081 CATACATACA TAAAACCATG AATTTTAGAG GCAAATTTAA TAACAGGAAC TACCTCTGTC TTGTTCACCA GTATGTGTAT 000160 000161 GGGAAAACAC ACCCTACACT GAACAGGAGA TATATCTTAT TTTCTTTTGA ATATTGCTTA TGGTACTGTA GGAAAGCAGA 000240 000241 GGAATTGAGA AATAGAAATT AGTTCAAAGT AAAGGGGAAA AAAATCACTA TCCAAGTTGG AGTTCAGCAA AAAGTTACTT 000320 000321 ATGACAATTA ACTAAAAATC CATATTTTGC CAATAACCAA CAGGCAAATA AAAAACCAAC ATTCAATGTT CAATTCAAAA 000400 000401 TAGCCAGTGA GGGAGAGGCA CCAATTAGAA GCAGCTGCAG TCCATGGCAC TCATGGAGAG GAGTGAAAGG GGTGAGTGAA 000480 000481 TACAGTTCTC CCACAGATCT TTGCAACCCA CGGATCAGGA GATCCCCTCG TGAGCCCATG CTACCAGGGC CTTGAGTCTG 000560 000561 ACACACAGAG CTGTGTGGAG TCTTGGCCCC TGTCCAGCCT GGCCCTGCCT TCCCTGGTCT GGAGCACATC CAATTCTCTC 000640 000641 TCTCCCCAGG ACTTTGATCA CTTCATTTTG CCCAAATTCT CCTCTGATCC CTATGGTTGT TCTTTATTCC CCAAGGGGTA 000720 000721 TTTCTAGCCC AGTACCCCCG CTGAGCTCCA GACTCACACT ACACAACGAA TTGGCCCTTA ACTGGGCACT CTGCGAGCCT 000800 000801 CTCCATCTCA CCCTGTCTAA AATCTCCTCA CTAACCTGGT GATCTCTCTG GCCTTCGCTG TTCATGGCCA CCACCTCACC 000880 000881 TGAAGCAAGG CTGGTGATCA TCCACTCCTC CCTCCCCTTC TTCAGGCTAA CCTCAGGTCT TCTCTGCTCT GCACTTCCCA 000960 000961 CAAAAAGCAC AGTGACATTT CAATAGGACT ATATTTGAAA TAGTTTATGA ATGAAAAGAA AGAACTATTA AAGGGAAAAT 001040 001041 GATGCAGCAC CACAGATGTG AGTAGATCGT CCAGCTGCTT TTCCTACAGA ATAAATACTA GATTCTCTCG GGAACGCTCA 001120 001121 CAGTGCTCTG TCACCTGGAT GCAGTCCCAT CTCCTCTCCC TTGCCCCAGC CTTGCCCAGC CCACACTGCA CTGTATATCC 001200 001201 AGTCCACCAA ACTTCTCTTC CTTCTCGGAG GGTATGGGTA TTCTCGCTTC TATGCTGGCT CGTGGTTTTG TTAGTTTCAT 001280 001281 TGCTGCCTTA GTCATGTGGG GGAATTCCTG ACCAATTCAT CCTTCTTTTT AATCCCTCAA TCCTGAATTA GGTAACTTTT 001360 001361 CCTCTATCAC TTTCAACATT ACATTATCAG CTGCAATAGA AGACCCTACA CTTCTGACTT GTGGACTCCT GAGAGCAAGG 001440 001441 TCTGTGATTA TTCCACATGT GTATGGACAA CACCTCTGCA GAGGGCCTGG CAGCTGCTAG ATGCTCAATA AACCTCTGCC 001520 001521 GAAGGCAGCT GCTAAAAGAA AAAAGAAAAT CTTACTACGG AAAGTAAAAG ATGATCCTCA GGCAAGAAAC AAAAAAGTGC 001600 001601 GACGGAAGCT CTGTTTCTAT CTCTTCAGGG CCGTGCTTCA TTATTATTTC CTCATTCTCC AATTCCTCAC AAAGCTCTAT 001680 001681 TTTATAAATG TTTGCAGAGC TTTAAGTTAA TCCTAACATT TACTCTCCAG CCCTCAATCT TTAATGACTC CTTCTCTAAA 001760 001761 AAAAAAAAAG GCAGAAAAAG TAAAGATTTA TATAAGTTCA AAAGAAACTT AAAAATCCAG ACAAAGACTT ATCATCAGCC 001840 001841 ACGTATGGAA TGTGAGTGGA TTCTTGCCTA AAAAGCTAGC TCTAGCTGCA AATTTCCTAT ATTCTCCCAG TGCCACGGGA 001920 001921 CGGTGATGAG AGGTCTCCCA CTCCATGGGG CTCTGCCCAC CTCTGCTCAC CCACTCCACA CCTCCCACCA CACTTTTCTA 002000 002001 GTGCTTGAAG GAAGTGAAGA CAGTAGCCTT TAACATGTTC CATTACAGCA ACTGCTTTGG TGTAGTGACT TACAAGGAAG 002080 002081 CCTGCAAAGG AG |
Predicted Small Protein
Name | NONHSAT106576_smProtein_692:841 |
Length | 50 |
Molecular weight | 5442.3577 |
Aromaticity | 0.0612244897959 |
Instability index | 49.0204081633 |
Isoelectric point | 7.99896240234 |
Runs | 7 |
Runs residual | 0.019194704909 |
Runs probability | 0.0482120776238 |
Amino acid sequence | MVVLYSPRGISSPVPPLSSRLTLHNELALNWALCEPLHLTLSKISSLTW |
Secondary structure | LEEEELLLLLLLLLLLLLLLLLHHHHHHHHHHHLLLLLLLLLHHHHLLL |
PRMN | - |
PiMo | - |