NONHSAT128175
Revision as of 10:22, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128175 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1709 nt |
Genomic location |
chr8-:104278773..104311010 |
Exon number |
5 |
Exons |
104278773..104279748,104280619..104280700,104280920..104281071,104298066..104298130,104310577..104311010 |
Genome context |
|
Sequence |
000001 cggcggcggG ACTGGCCCTG CGCCCGGGCA CCGCCTGCGC TGCGCCGCCC GGCCTCACTC CGCGGCCCGC CAGGACCCGG 000080
000081 CCCCGGTGAA CGGGCTCGGG GTGCCGAGGT CCGGCTGCGG GGCCGGGAAG CCACCTCCAC CTTGCCGTCT GTTACGACCC 000160 000161 CCGAGGCGCA AGGCTGAGCC CCATCTCGCT ATCCGGGTCC GGAGGGGTTC ACCTTAGAAG GATTTTTTGA AGCTCTTGGC 000240 000241 GCTGGCTCTA AAAGAACCCA CTTCCTTGCG GATTTCAGGA GTCAAGAATC CTTAAACGGA GCCAATTTGC TTTGTAAAGC 000320 000321 CAATTGCCCA AGTGACTTGA GTTCGAAAGG AGATACTTCC TGGACAACTG CTATAAAAAC AACAACAAAT ACTTTTATTA 000400 000401 ATTCGGGGAG CCTGGTCACC AACTGGATGC TCAGGGGAGA TGGAACCCTG AGCAGCCCAT GTACATGGAA GATCTTTATT 000480 000481 GCAGAGATCT TCAAACCAGg aaactgaggc taaagagttt agtattctgc caaggccagc taatagttac agagcatggt 000560 000561 tccaaattca gagctgtcgg aagcttaagc ccatgtgatg aaccacGAAT GTGATTttac ctcatttaag ccttgcagca 000640 000641 aactctgcca aCTAGTGTGC ATTTACTCCT GCCTCTCCAT GCCTGAAGGA AGGAATgaag aggtctctgc tgtccatctg 000720 000721 agccagtgac tggGCTGTCT CTACCAGGCC AGAATTTGGG GCAGGCAAGA TTTTCAGCAT CCCTAAAATC ACACTAAGAA 000800 000801 GATAAACATG GAAACAGCTT GGAGCTGCCC TACCCATAGT GAGGTGGTAC TGACTGGAAG ACAGCTTAAA CGATTTGGAG 000880 000881 AAAAGTGGAA TACATTAATC TCAGAAAACT CTACCACCTG TAGAAAGAGA GCTAAAATGG AGACAACCAC AGGCAGTCTA 000960 000961 AGATACGCTG AACTACTACA GAAAATAATG CAGCATGAAG GAATGCTGGA AGGTATGGGG TCAGAGCAAG CTGATGGAGG 001040 001041 GTCCTTCATT TCCAAGCCAC GAGTACAGCA GGATGTAAGG CTTAGTTCAT AAGAACATCT CCTGAAAGAC AATCTCTATA 001120 001121 AAAACTGTTT CAATAGAAAG AATGCAAGAT GTAACTGTTT AATAATAGGA CTGATATTTT AAAAAACAAA TGAACGTAAT 001200 001201 AGAAGACTAG ATGGATGTGC TTCTCAAAGT CCTCTCTGTG GGAGGCTTCA TCCTCACTCT AGATGTGTTG CCtgtagcag 001280 001281 ctgttattga ttacccgccc atagcctatc catacttact catcattcct ttacctacca gtggcatcct attggaagca 001360 001361 cctgcgactt tcttagggct ttctcttggc caagcattgg aaggccagca gtattgaaaa gttaatagtc ttggaagcac 001440 001441 tggccctcaa ctaatgacaa agaaaaaata taagataaat tccccagctt ccttgcctcc tgaatgggtc aagtctgtgg 001520 001521 tgtgttctac ccgtttttca gaggtcccat gttttaaacc ctagctgctc aaggcaattt cctgatcatt gatgtactct 001600 001601 ctattggcta atttttagat aatatggaat atgctcaaaa taggatactc aaagaaaaaa tcagatgcca aaattatgta 001680 001681 caccgaatga gttcaattct gtataagtg |
Predicted Small Protein
Name | NONHSAT128175_smProtein_458:613 |
Length | 52 |
Molecular weight | 5950.9355 |
Aromaticity | 0.078431372549 |
Instability index | 40.6823529412 |
Isoelectric point | 8.58917236328 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.0435309258839 |
Amino acid sequence | MYMEDLYCRDLQTRKLRLKSLVFCQGQLIVTEHGSKFRAVGSLSPCDEPRM |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHHLLLEEEEEELLLEEEEEELLLLLLLLLL |
PRMN | - |
PiMo | - |