NONHSAT034238
Revision as of 10:24, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034238 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3431 nt |
Genomic location |
chr13-:69435417..69459457 |
Exon number |
3 |
Exons |
69435417..69438548,69444195..69444346,69459309..69459457 |
Genome context |
|
Sequence |
000001 GGGGGGAGCG CGGTGGTGAT CAATGGGCCT AGTCCAGAAG ACTCTGTCTG TATGTCCCAT AGGGAGGTCA CAAAGAAGTC 000080
000081 CTTATTGAGG GCAGATATCT GGACTCACCA CATTCAGTAA CTGGGAGAGA GCTGAGAACT GGAAATTTGG TTGGCAGAGA 000160 000161 TTCAGACAGA GTATCCATCT TGACAAGTCC TTTCAGAAAC AGTAGCAGGG AGAAAGTGGA TATAGAGAAT CATGCACTAA 000240 000241 GCTTCGAAAG TTTATAAGCA AAAGTGCCAT GGGTTTCTTC TACTCAGACT CCAATGTCCA GGGGCTTTAT GATAGCTGAC 000320 000321 AAGAAGCACT TTGTACTCAA CTCCTCCACT AGAAGCACCA AAATTATGAA TAGATTATCA CACCTCAAAT CGATGAAACA 000400 000401 AGAGAAAATG GAAATTCAAT GGAAAAGTGA CAGACAATAA TTAAAGCAAA GGAGAAGGAA GCAAGGCAGC TTGCAAGGCC 000480 000481 AGCAGTGGCT GAGAGCTGAG AGATACTCCC CAGTATGGAG AAAGAGTAAG CGAAATACCC TCAGAGGTTT ACGTTTGCAT 000560 000561 CATGTACTCT GGCAATCCTA GCCATAGGAA AGACCCTTAA CCCTTGGAGG ACCCTGAAAC TAACATAAAG AGCTAGAAGG 000640 000641 AAATTGTGTG AAGGCACTGC ACCAATGAGG AAGGTAGCAC TGAGTCCCAC ACATTCTCTG AGACCACAGC AGCTACAGCA 000720 000721 AGGCACCATT TTAGAGCCCC GTCTTCAACA GACTGCTCAC TGTGCTAGAG TCCAACATCA CTGGCGCTGA GGCACAAGAG 000800 000801 ACGTGACAGC TGCTGCCACC AGGCCTTAGG TGCAAGCAAC CATGGTTGAC CACACCTGAG ACTGAGCAGC AAGCAAGGCT 000880 000881 CCCCAATAAC TGCACTTCAC CTGTAAAGAC ATATAAAGTC TGAAAATAAA GGAATGACAA AAGATATTTC ACGTAAATGC 000960 000961 AAGCTAGCAG GACTAGCTCT AGTTAGAGTA GATAAAACAG ACTCCAAGTT AAAAGCAGTT AAGAAAAAAA AAAGAAAAAG 001040 001041 AGGACAATGA AGGGCATCAT ATAATGATAA AAGGAAAAAT CTGGCAAAAG GATATAACAA TTCTAAATAT GTATGCACCC 001120 001121 AACACTGGAG CACCCAGATT AATAAAGCAT ATATTCCTAG ATCTAAAGAG AGAGACAGAC TGCAATACAA TAATAGTGGA 001200 001201 GGACGTTAAC AATGCACTAG CAGCATTAAA CAGATCATCT AGACAGAAAA TCAAAAAAGA AACATTGAAT GTAAACTGGA 001280 001281 TCTTAGACCA AAGGGACCTA ACAGACATTT ACAGAACATT TTATCCAATA ACTGCAAAAT ATACTACACA TTCTTCTCAT 001360 001361 CACTACATGG AACATTCTCC AGGATAGGCC ATATGTTATT CTTCAAAGCA GTTTCAACAC ATTTTAAAAA ATTATATTAT 001440 001441 CTTCTAAGAA CACAATGGAA TATAACTAGA TATCAACACG ACGAGGAACT TTTGAAACTG TACAAATACA TGGATGTGAA 001520 001521 ATAACACGCT CCTGAACAGC CATTGGGTCA ATGAATAAAT TAATATAAAA ATAAAAAAAA ATTATCACAA ACGAAAATGG 001600 001601 AAACACAACA TACCGAAAAC TATGGGATTC AACAAAAGCA GTACTAAGAG GGGAATTTGT AGCAATAAAC ATGTATATCA 001680 001681 AAAGAATAGA AAATTTTCAA ATAGTATAAC AATGCACCTC AAGGAATTAG AGTAGCATGA ACCAGACAAA GCCGAAATTA 001760 001761 GCAAAAGGAA AGAAATAATA AAGATCAAAG CAGAACTAAA TGAAATAGAC ATTAAAAAAC ACACAAGTTC AGTGAAAAGT 001840 001841 TGATTCTTTG AAAGGATAAA AAAAAATGAT TAAATGTTAG CTAGACTAAC CAGGAAAAGA CCCAAATAAA CAAAATCAGA 001920 001921 AATGAAAAAA GCAACATTGC AACTAATACT ACAGAAATAC AAAATATCAT CAGAGATTAT GAACAACTAT GTATTAAAAT 002000 002001 AGTGGAAAAC ATAGAGAAAA TGGGTATATT TCTGTAAACA TACAACCTAT CAAGATTATA TGAGAAAGAA ATAGAAAATC 002080 002081 TGAACAGATC AATAATGAGT AGTGATATTA AATCACTGAT AAAAAATCTT TCAACAAATA AAAGCTCATG GCTGAATGGA 002160 002161 TTCACTATGG AATTCTACCA AACATAGAAA AAGGAAATAG TACCAATCCT TCTCAAAGTA TTTCAAAAAA CTGAAGAGGA 002240 002241 GAGAATTCTT TCTAACTCAT TGTAAGAGGC CAGCATTCCC CTGATACCAA ACTAACCAGA GGCCTAACAA CAACAAAAAT 002320 002321 ACTTACAGGT CAATATCCCT CATGAAGATA GATGCAAAAA TTTTCAATAA CATAATAGCA AATAAAATTC AGCAGGACAT 002400 002401 CAAAAAGATA ATACATCATG ATCTATTGGG ATTTTTCTTA AGGATTCAAG GATGGTTTAA CATATGCAAA TCTATTGAAG 002480 002481 GGATGTATCA CATCATGAAA ATGAAGACAG AAACATATAC TCACAATAGA TGTAGAAAAA GCATTTGATA AAATTCAACA 002560 002561 TCTCTTCATG ACAAAAACTC AATGAACTAG ACATATGAGA AACATACCTC AGAATAATAA AGGCTACATA TGACAAATCC 002640 002641 ACAGCTAATG TCATTCTGAA TGGGAAAGGT TGAGAGTCTT TCCTCTAAGC ACTAGAATAA AACAAGAATG TTCACTTTCA 002720 002721 TCACTCTTTT TCAACTTAGT ATTAGGAAGT CCTAGACAGT CCAATCAGGC AAAACAAAAA ATAAAAGATA TCCAAATTGG 002800 002801 AAAAGACAAT GTTAAATAGT TCCTATCTGC AGATGAAATA ATGTTATATT TACAAAAACC TAAAGACTAC ACCAAAATAA 002880 002881 CTCTTAGTGC TTAAAAATAA ATTCAGTACA GTTGCAGAAG ACAAAATTAA CATATACAAG TTAATAACAT TTCTATACAA 002960 002961 TAATTAAATA GTTGAAAAAT AAATCAAGTT GGTAATCCTA TTTCCAGTAG CTACAATAAA AACAAAATAC CTAGGAATAA 003040 003041 ATTTAACTAA GGAGGTAAAA GATCTGTTCA AGGAAAACTA TAAGACATTG ATGAAAAAAT TGAACAAACA AATGAAAAGA 003120 003121 CATCTTATAG TCATGGATAA GAAGAATTAA TATCCTTGAA ATGACCATAC TACCCCAAAT AAAATACACA TTCAATGCCC 003200 003201 TCCCTATCAA AATACCATTG TCATTTTTCA CAGAAATAGA AAAGCAATCC TAAAATTTTT ATGGAACCAA GATGTAGTCG 003280 003281 GAATAGCCAA AGCAATCCTA AGCAAAAAGA ACGAAGTTCA AAACCTCACA CAAACTGACT TCAGATTATA AGGCTATAAT 003360 003361 AATCAAAACA GCATGGCATT GGTATAGAAA TAGACACAAT GGGACAGAAT AAAGCACCCA GAAATAAATC C |
Predicted Small Protein
Name | NONHSAT034238_smProtein_293:439 |
Length | 49 |
Molecular weight | 5769.7306 |
Aromaticity | 0.0625 |
Instability index | 47.3041666667 |
Isoelectric point | 10.6901245117 |
Runs | 7 |
Runs residual | 0.0197368421053 |
Runs probability | 0.0356070356072 |
Amino acid sequence | MSRGFMIADKKHFVLNSSTRSTKIMNRLSHLKSMKQEKMEIQWKSDRQ |
Secondary structure | LLLEEEEELLLEEEELLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |