NONHSAT130441
Revision as of 11:14, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130441 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2949 nt |
Genomic location |
chr9+:22646108..22688453 |
Exon number |
5 |
Exons |
22646108..22646877,22674434..22674694,22682469..22683267,22683873..22684083,22687546..22688453 |
Genome context |
|
Sequence |
000001 GGGTACGATT TGCACTTATG AACTGTGTGT AATTATGGTG ATTCAGGTTT TGGCTTATAA TGAATCCTCC ATCACAGTCT 000080
000081 GTTTTCTCGG TCTTTTATTT TCTGTTCCTC TAAGGGAAGA GAGACCAAAG AGAATTCTAC TTTGACCCTG GCTTAAGAGT 000160 000161 GGAACATAGA TGTCTATAAA ACTATGTGGT ATGTACATTT ATAAAAATTT TAATTTGCAT TTTCTCTAGG TTTTATGTTT 000240 000241 TTGGTGATAA CAGAATAAAG TGTGCATGCC ATCCAAGATA AATGGATGAA GGAAGTTCAC TTCTTTTTAA TTATCTTATA 000320 000321 CTGACAGATA AAGCAAAATA GAAAAAAAAT TCTGTATTTA ACCTTAACAA GCTGAGACAC ACTAGAGAAG TGGAAAATAG 000400 000401 ATTGTGTGCA TCTGATCGTG CTGCACATTC CCTTTAGGTT GCAATCTCTG CTGTTATTAC CGACAACAAC TGAGACTACA 000480 000481 GTTTTAACTC TGTATTTACT TCTAGTTATC CCACAATTGG TACATAGTAT TGGATGGAGC CCTGTATTTC AAGGAGTTCA 000560 000561 ACTACCTAAT TTTCATAGCT GAGATAACTA AGTTTCTGAG TCCGTTTTCC TTTTTCCAGT CTGATCTCTC CTTTTCTCAA 000640 000641 GGCTACTTTC GTTTCTGATA ACATACTAAA GGTTATAGGA TTTATCGGTA TTTTGCCTCC TGGGGTCATT TGTTATTAAA 000720 000721 AAAGAAACTC TATTCAAATA ACTGAATCTC TACTATTGGA TTTTCCAAAG TCTATTAGGT ACCAGCATGT TATGAAGAAT 000800 000801 AAGCAagaag aaagagaagg agaagaagca ggaggaggag gagagaagga aagggaggag gaggaggaga aaaagatggt 000880 000881 ggtagaggag gaggagaaga agaagaagga ggagaaggag aaggagaaga aggagcagga ggaggaggaa gaagaagaag 000960 000961 aggagaaggG AACTCACATG TAAGTTACAG GTATTTTTGT ATTCATGTTA TACATTAAAG AAGCTGAAAT TGAAGTTGTG 001040 001041 AGAGGGAGGG ATTAAAATTA GGCAACTATT TTACAAAACA ATACTTGCGT GTCACTTTGC TCAGTAATGT CTTTTTAGCC 001120 001121 ATGTGGATTT TTAGTTCATC AAGTCTAATT CTCTTGTATC CTTTATTGCA GGCTACCTGT GTGAGTCACA TGTCAGTGCA 001200 001201 ATTTCTGGAG GTCAATTGTA GCCCTGAAGT CTCAGAACAA TGGCAAAAAG AAATACGGAG GGCATGATAC ATTTGGTAAG 001280 001281 TGCCTTATGT AAACCACAGA AAATGATAGA GGCAATTTTT TTCTTTCCTA AGGCTGGTGA TTTATTGCAT ACTTCTTGTC 001360 001361 ACGGAATAGA TAACATAGGA GGACAGGAAG AAATTTGCTA GTTTACACAG TGCCCCCTGA AAATAATTCA TCGAATTGGG 001440 001441 CTCCTTTGGA AACATTCACA TATTCTGCAT GTATTTTTAC CAGACACATT TAGCATCGTA ATGGCATAAT AAAAGCTATC 001520 001521 ATTTGGGAAA TATACACATT GCTCCTATCT GAGTGCACAG TGGTGTTGGT AGGTACTGAG GGAGGAAGAG ACACATGTGC 001600 001601 CCTGAGGAAG TCTCTGTTTT GTCTCCATGC ACATTTAAGT CTTTTACACA TTTGAGAAGG GACTGGGAGA GGAGCATGGG 001680 001681 GGAAGGGGGC TGGATGTGGC TGGCATCTTC TAAGATTTAT GAACTGCTAA ATTTAGAAAT GTCATTTTGT TATTGCCAGT 001760 001761 GAACTGCTAG CATCTTCGTA TGAGTCACTA AGAAAAAATA GCAATCACCT CCTTTGCAAG AGCTAGTATG CTTGTTCACT 001840 001841 GATGACAGTA TGACTTTCGC AAGTAGATCA GAGAGAGATT TCAGTGTCTG CATGTGGTGT GCTATCTCTT TCATCTGGTC 001920 001921 ACAGGAAGCA GCAGGCACTT TTTTTTTTTT TAACGTAGAG AAACCTAGGt tctgtttctc ctctttttcc tgattctcca 002000 002001 tcttttcttt ttttccttcc cattttcttt ctctccatct tTTTTAGTGG AACTTCCACA TCTTCAGGTG AGACCTCTAG 002080 002081 ACAGTAACCA CCAAATGATT Gtgagaggtg aagccagctg gacttcctgg gtcaagtggg gagttggaga acttttctgt 002160 002161 ctggctagag gattataaat gcaccaatca gcactctgga aaaatgcacc aatcagcact ctgtgtctag ctaaaggatt 002240 002241 gtaaaggcac cattcagtac tctgtaaaaa tgcacaaatc agcactctgt gtctagctaa aggattgtaa atgcaccaat 002320 002321 caccactctg taaaaacgca ccaatcagcg ctctgtgtct agctaaaata aacgcaccaa tcagcactct gtaaaatgga 002400 002401 ccaatcagcg ctctgtaaaa tggaccaatc agcaggacgt ggacggggcc aaataaggga ataaaagctg gccacgcaag 002480 002481 ctagcagcgg caatcctctc gggtagcctt ccgctctgtg gaagctttgt tcttttgctg ttcatgataa atcttgctgc 002560 002561 tgctcactct ttgggtccgc actaccttta tgagctgtaa cactcaacac gagggtctgc ggcttcattc ctgaagtctg 002640 002641 cgagaccagg aacccaccgg gaggaacaaa caactctgga cacaccacct ttaagagctg tgacaatcac ttgcgaaagt 002720 002721 ctgcaacttc actcctgaag tcagcaagac cgtgaaccca ccagaaggaa gaaactcggg acacatctga atatctgaag 002800 002801 gagaaaacac tccagacaca ccgtccttaa gaactgtaac actcactgcg agggtcagcg gcttcattct tgaagtcagt 002880 002881 gagaccaaga acccaccgga aggaaccaat tctggagaca ATTGGAGCTT TGAAAACTAT TTAACTAAA |
Predicted Small Protein
Name | NONHSAT130441_smProtein_791:982 |
Length | 64 |
Molecular weight | 7612.0588 |
Aromaticity | 0.0 |
Instability index | 125.628571429 |
Isoelectric point | 4.56927490234 |
Runs | 10 |
Runs residual | 0.0137674117266 |
Runs probability | 0.0133986928105 |
Amino acid sequence | MKNKQEEREGEEAGGGGEKEREEEEEKKMVVEEEEKKKKEEKEKEKKEQEEEEEEEEEKG THM |
Secondary structure | LLLHHHHLLLLLLLLLLLLLLHHHHHHLLEEEHHHHLLHHHHHHHHHHHHHHHHHHHHHL LLL |
PRMN | - |
PiMo | - |