ENST00000480826.1
Revision as of 11:59, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000480826.1 |
Source |
Gencode19 |
Same with |
lnc-TRAT1-1:1,NONHSAT091101 |
Classification |
antisense |
Length |
564 nt |
Genomic location |
chr3+:108820303..108829189 |
Exon number |
3 |
Exons |
108820303..108820406,108828611..108828696,108828816..108829189 |
Genome context |
|
Sequence |
000001 GTTCTTCTTG TTGGCCTACC TGAATACATG CTGAAGAATT GTCCTGAGGA CCCTCTGTCA GTCTGGGTAC AGATATGCTA 000080
000081 TAGTTCAGTG GCACATGGTA TGAGGAGAGA GCTGCCTGCA GAGAGCGTGA GTCCTGATCC CTTGTCCCAG GGCAAAAGAG 000160 000161 TTTCAGAGGA AGCCCAACTC CACTGGGCGG TTTTTCAGGA CCTGGAGAGG AGAAGGAGAT GAAGAGTGTC ATTTATTGTT 000240 000241 TCCTCAGTTA TCTCAAGAGG TCCACGTCTA TCTCTCTCAT GAAGCGTAAG CACTCCTCTG ACTCAGAACA CTCAGTTAAC 000320 000321 TGAGGTGCTT TTTAAACAGA GATATGGATT TAGATCATGG AGCATATCCT CTCACCCGTG ACCAGTAGCC AATATTGCAG 000400 000401 AACAGCTGAC AGAAATGTGG TAGGGATGCT GCGTGACTAC CTGGGCATTA CTCTACAGAG CTGGATCACA GAACCTAACT 000480 000481 TCATTAGCAT CATAGTCTAA TGAGATAACT AGTGAGTGCA ATAAATACTT GATGACTACG AATAAAGTCA GCAAAGAAAA 000560 000561 CAGA |
Predicted Small Protein
Name | ENST00000480826.1_smProtein_356:499 |
Length | 48 |
Molecular weight | 5369.1561 |
Aromaticity | 0.0851063829787 |
Instability index | 59.0382978723 |
Isoelectric point | 5.46453857422 |
Runs | 8 |
Runs residual | 0.00393617021277 |
Runs probability | 0.0361243596538 |
Amino acid sequence | MEHILSPVTSSQYCRTADRNVVGMLRDYLGITLQSWITEPNFISIIV |
Secondary structure | LEEEELLLLLLLLLLLLLLHHHHHHHHHHHHHEEEEEELLLEEEEEL |
PRMN | - |
PiMo | - |