NONHSAT133461
Revision as of 12:05, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133461 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2311 nt |
Genomic location |
chr9-:99837953..99844227 |
Exon number |
3 |
Exons |
99837953..99839973,99841569..99841724,99844143..99844227 |
Genome context |
|
Sequence |
000001 TTTCAGGAGA AATGATACCA GCTTTTTTTG TACCTCTGGT AGAATTCAAC TGTGACTCCA TCTGGTCCTG GGCTTTTTTT 000080
000081 GATTGGGAAG CCATGTGACT TCATCCTCCG TGGCTCTGGT GGTCTCTTCG ACATCTGTGA GATACTCACT AAAAGCTGGT 000160 000161 TGCGCTTTGA GATCTGGGCG CCTGCTGGAA CCTGGAGCCA CAAGTCTTCA TTCATGCTAA AGAACTCCTG TCTTGGTGGA 000240 000241 GTGGCTCGGC TGGCCCGTGT ATGGGAACCC ATGAGGCTGT CCGCGCATCC CGAAGTGTGA CCTTCCAGGC CCACAGGGTG 000320 000321 GCTGGCGCTG GGCTTCTTCG TGGCCCGCGA CAGTCCGGCC ACCTTCATCG GCCAGTGGCG CACGGATCTG GGCGACTCCG 000400 000401 AAGTGCTCCG CGAGCTGGCA AGGGAGACAC TGGGACTCTG CACCCGCTCA GCTCCCCAAG ATAAAGGCCT CGGAGGGGAA 000480 000481 GTTCCGCGTG GGAGACTCCG GCCTGTTGGT CTCTGTGCTG GTGCGGGGGA GCCGCGTGAC GGCGCGCGTG GGTGTGGCGA 000560 000561 CCCGCTGGAG CGCTACCTGG ACCGTCAGGA CCCGCGCTGC CGCTCCTCCA CTACCCACTG CCCGCCCCCG TCGAGGGTCC 000640 000641 GCACCCTGTC CCCGCAGAGG GTGTCGCCCA CCCCTAGCCC CTGCCCTGGT AGCCTGGTCC CCTCGAGAGA GCGCCGGCGC 000720 000721 TCCGGGCCCT AGGTGACCCC TATTCGCTTA CAAAGCATAA AGCAGGTGCC GAGGCTCCCA GGCCCTGGGA TCAGCTGCCC 000800 000801 GCCGCATCCC CGCTCCTACT CCGAGGACAG TGACTCCTCA GCTTTCTCAG CCCAGAGCCG CCCCCTTGGT GCCCGCAGCG 000880 000881 AGGATGAGGC ACTAGGCCCG GAGGAAGCGA TCCAGACGGG GGCTGACCAC CACCACCTGG CCTCTCCGAG ACGGCCCCCT 000960 000961 GCCCCGCGCA GCCAGTCCCG GGACCGGCTG GATCCGGGTC AGCCCCGGGG AGCTCCAGAA GAGAGAGGAG GGGAGCCCAG 001040 001041 CTGCGGGCCC TCAGCCCTGC CCCGTGGGCG CAGGAGCAGG TTGGGCGCAA GGATGGAGAT GGGCAGCACT CGTGGGAGCC 001120 001121 ACAGGGCAGG GGCAGCGGGG CTCGGGCAGG AGCACTCCTG GGCTCTCCGT GCCCACCGCC CTGAAGCACC CTGGCTTTCC 001200 001201 CAGTCCAAAC CCAGTGTAGA GTTTAGCACC ACACGCGCCA GCGTCTTCCG CACACACCAG AGCAGCTGCT CTGACGCCTG 001280 001281 GACGAGGAGT TTCTGGCCAA TGCCGGGACC CATAAGGCTG TTGCTAGCGG GACCTCCACT AGACCAGCCC CTAACCGGGC 001360 001361 TCCAGCCCCA GACCCTCTAG CTCCTGACTC GGCCTACAGA TCCTCTAGTT CCTCCTCTTC ATCCCTCATT CTCTTGTATG 001440 001441 GCAAACGTGG CCAACGTGGG GACTCTGGCC TTAAGACCAA TGGGCTGCCC GGCCCGCTGT CAAGCCCTTC CCAGCTCCTC 001520 001521 CTCCAATGAA GGAAAGCCCT GCCCTAGCAT GGGAGGGGCT ACTAGATGCA CCTGGGAGCC CCCTGACTGG TCCAGAACAC 001600 001601 TCGAGGACCT GAGCACTGGG TAGGATGGAC ATACAGCCAG ACTGCAAACC CTCGGGCATC CCCATGCCTA GGGTCTCCCC 001680 001681 CGGGTTCCTC CAGACCCACA GAGTTGGGGG GTGCGGGGGG AAGGGGAAGG GAGCTTGCAT GCCTCCAGCC AGGTTCCTGG 001760 001761 ACCAGACCAG CTGCCCCCAA ACCCTGTCCC TTCTCCTTTT CGTTTGTGGC CTTAACCCTC TTTGCATCAG GGGGCCCCCT 001840 001841 CTGCCTCTTG CGTTCCTGAC TTCATGGGAC CAGACTCCTC AGGAATGTCA CAATGGGACC TCTATTGTAC ATTACAGTTG 001920 001921 GGGGATGAGC TTTGCTATTT AATTACTAAT ATTATTGAAT GCCTTAGAGG AGGCCAGAGC AGCCTGGTAT CCTGAGGACA 002000 002001 CGTGGCCCAG CAGAGCCTCT GAACAGTAAA GTTTTGCTCC AGCCAAAATG AGAGAGAGAG AGAATCTATT AAGTTAGTTT 002080 002081 AACCAGAACC CCCGTTATCC CTGATGCTTC CTGTTAGTAA TTTTGTATCC AGTGACCCCT GTCCCTTGGC CATAAATTCC 002160 002161 TACTTGTGCT TGTTCTATTT GGAATAGAGC CCAGTTCTGT ACTGATGTCT CTTTTCCCCA ACTGAGATAG TTTCTAAATA 002240 002241 AAATTTGCCT TTGCTGCTTT AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT133461_smProtein_260:463 |
Length | 68 |
Molecular weight | 7023.8485 |
Aromaticity | 0.0149253731343 |
Instability index | 40.6537313433 |
Isoelectric point | 12.3688354492 |
Runs | 10 |
Runs residual | 0.0059388919278 |
Runs probability | 0.0484631690515 |
Amino acid sequence | MGTHEAVRASRSVTFQAHRVAGAGLLRGPRQSGHLHRPVAHGSGRLRSAPRAGKGDTGTL HPLSSPR |
Secondary structure | LLLEEEEELLLEEEEEEHHHHLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLEEE LLLLLLL |
PRMN | - |
PiMo | - |