ENST00000377680.3
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000377680.3 |
Source |
Gencode19 |
Same with |
, |
Classification |
intergenic |
Length |
3437 nt |
Genomic location |
chr9+:38621085..38624987 |
Exon number |
2 |
Exons |
38621085..38621362,38621829..38624987 |
Genome context |
|
Sequence |
000001 GAGTGCACCT GGCCTGAGAG CCCGCCAGGC CCTGCCCCTG CTCGGCTCCT CGTCTGCTGA AGCTCGGGAC CTCTAGCCAG 000080
000081 TGGCCCTCTG CAGCCACGGG GAATGGGGCT GAGAGCCGGT TCCCGCTGCA GGGCAGACCA CCTAGCTCAG CCGCAGCCAC 000160 000161 AGGGACATCT GGCCCCGGTT CTGAGATGTG GGGAGTGCTG GCGGGCTCGG GGGTTGCCTG GAGGCTGCTG CCTGCACACA 000240 000241 GAAGGCGGAT GCAGCTTGGG TGCCCAGGCG GGCTGGAGGA CAGCGGGCTG GGAAGCCAGG GGCCGCCGGG ACCTGGGGCT 000320 000321 GGAAACCACA TCTGCCCACA GCCGCAGCCT CCTGCACCTG TCATCCTGGC GGCGCCCTGA CGTCGGAGAA GCAGCAGGCG 000400 000401 CGGAGCTCCT GCAGCGGGCA CCGCTGCAGC AACCCGACCC GGCGCAGGCG GCAGTGGAAG GCGGCCTGCT AGCACGGCTC 000480 000481 CCGCGGCCCC AGGACCAGGG GTGCGGCCAG CACCGCCCTC ACTCCCCGCG TCTCGTGGAT ATTGCCCTCC CTGGAGGCGG 000560 000561 CTGGACCTAA GCGAGGCTCG CAGCGATCGG CCCCGCGAAG ACTCGCATGC AGGGCTCAGG ATCCCGCATT CTGGCGCCGC 000640 000641 GGCACCGCAC CTTTCAGCAG CCCTGCTCCT CTTCTTGTTG GTAAACTTTT GTCACTCTGC CATGAAAAGC ATCCAGGCGT 000720 000721 CCTTGATTTC GACATTGCGT GCACGCTCAG CCGAGCTCAT CAGACGGGCG GTTGTCCCCA GAGCCCGCGG GTAGCTTGTT 000800 000801 CCCGGGCGGC GGCTCCTGCT GGATGCAGCT CCTTGTGGGC CTACCAGGCT TGGTGGAGCC ACAGCAGACC TGTGGAGAGG 000880 000881 AAGAGTAAGG CGGGCTCTGC AGGGCAGTGG GCCGGGACCA TGAGAGAGGC GGGTCAGTCT GGGCTCCAAG CTCAGCCTCT 000960 000961 CGGATTCCCC GGGACCCACG GCTTATAATG CGCTTAAATC CCACGCCTCG CCCGAGAGAC AGCACGTCAC CGTCACCGTC 001040 001041 ACCGCCTAGC GCCCCTGACC CGCTCCCACT CCGCTGCAGC GGAGGGTGTG TGAGGGAGAG GGACGCAGGG AGGGAAAAGC 001120 001121 GTTGGGAGGG CAAACATCTT TTCATAAGCT TTTCCCCTTC TATATGCCAT CTCTGATGGG AGCCTCTTTA GATCTTTCGT 001200 001201 CCATTTACTA ATTGGGTTGT TCGATTTCTT ATTGTTGAGT TGTAAGTGGT TTTTAATGGT CTGGATGCCA GACAGGTGTT 001280 001281 TTGCAAATAT TTTCTCCGTC TGTGGCTTGT TTCTCCATTC TCTTATTTCC TTTCCCAGAG CAAAAGTTTT TAATTGTAAC 001360 001361 GACTTCATAC CAATATCTTC TTTCATGGTA GAAATTTGTC TTTTATGTAC TTTACTGTTG TATCTACAAA GTAATTGCCA 001440 001441 AACCCAAAGT TACCTAAATA TCCCTTTTGT TATTTTACAG AAGTTTTACA GCTTTTGGAT TTAAATTTAG GTCTAAAAAT 001520 001521 TGAATTCATA AAAGTAGAGA GTATAATGAT GCTTACCAGA GGCTGTGTTG CTGGGGAGAA AAATGGGAAG TTGTTCACAG 001600 001601 ATGCAAAGAT TCAGTTAAAC CGGAGAAATG CGTTTTGAAA TCTATTGCAC AGCAGGATGA CTATAGTCAA TAATAATGTA 001680 001681 CTGTATATTT AAATAACAAA AAGTAAATTT CAAATATCTA ACCACAAAAA ATAAAATTGA GGTGATGGGT ATTTTTTATT 001760 001761 TTATTTATTT ATTTGTTTAT TTATTTATTT TTTTGAGACA GAGTCTCGCT CTTTCGCCCA GGCCGGACTG CAGTGGCAGG 001840 001841 GTCTCGGCTC ACTGCAAGCT CCGCCTCCTG GGTTCACGCC ATGAGGTGAT GGATATTTTA TCCTCGATGT AGTCATTCCT 001920 001921 CATTTTATAC ACATATCCAA GCATCACATT GTACCCCATA AATGTATGCA ATTGTGGTTT GACAATTTAA AATATTATTA 002000 002001 ACTTAAAAAT GTGTCGTTCG AGTTAATTTT TGAGGAGCAA GGTCTGTGTC TCAATTCTTT TTTTTTTTGC ATATATGTAT 002080 002081 ATATACATAC ACGCAATGTA TTCATCACTG TTTTTGAAAA AGCTACCCTT TCTCCCTTGA ATTGCCTTTA CCTTTTTGTA 002160 002161 AAAGATCAAT TGACTGTGTT TGTGCACTCT TATTTCTGAG TTCTCTATTC TGTTCCGTTG ATCACTTTGC AAGTCCTTGA 002240 002241 ACTTTGTTCC TCCCCCACAA TATTGTTGGC TATTCTTGTT AGTTTGTCTT TCTATATAAA CTTTAGAATT AGTTTGTCAA 002320 002321 TTTCCACACA ATAATTTATT CATGTTTTCA CGAGAGTTGT AATGAATTTG TAAATCACAC TGAAGAGAAC TGACATCTTA 002400 002401 ACAACACTGG GTCTTATTTT GTGAATACAG ATGTCCCTTC ATTTATTTAG ATCTTTAATC CCTTTCAACA GATTTTATAG 002480 002481 TTTTTCTCAC ATAGACCCTG CCCATATTTT GCTAGATTGT GTCTATTTCA TTTTCTTGAT GCTAATGAAA ATGGTATTGG 002560 002561 GCTTTTAATT TCAAATTCTC GTTGTTCATT GCTGGATGTA GGACAGCAAT TGATTTTGTA TATTAACCTT ATACCGTGCA 002640 002641 ACCTTGCTAT AATCCAGAAG GGTTTTTGGC TGATGCTTTG AGATTCTCTA CATAGAAAAT CAAGTTATCA GCAAGCAAAG 002720 002721 GGCATTTTAA TGCTCCCTTT CCAATCTGTA TACCTTTTAT TTTATTTTCT TGTCTTATTG CATTAGCTAG GATTTTAGTA 002800 002801 TGATGTTGAA TAGGAGCAGT GAGAGGGGAT AACATTTCCT TGCTTCTTTT GTGTAAAACA TCCCATTTTT CACATTATGT 002880 002881 ATGATATTGT CTGTAGGATG TTCTTTTGGT ATATGTTCTT TATCAGTTGA GGAATTTCCC TTCTATTTCT AATTTGCTGA 002960 002961 GAGTTTTAAC CATGAATGGG CTTTGGATTC CGTAAAATGC TTTCTTGATC TATTAATATA ATCAAATAAC TTTTCTTCTT 003040 003041 TAGCTAGTTA TCTGAGGGAT TGCCTTAACT ATTTTGTGTT AAGCCAGGCT TGCATACCTG GAATAAATCT CACTTGGTCT 003120 003121 TGGTGTGTAA TTCAACAATG TATTGCTAGA TTCAGCATGC TAATATTTTG TTGAGAATTT TTGATGAGAG ACATTTGTCT 003200 003201 GAACATTTTT CTTTAAATGT CTTTTTCTGC TTTTGGTATT AGAACTTCAT AAAATGAGTT GGGATATGTT CCTTTTGCTT 003280 003281 CTGTTTTCTG GTAGCAATTG TAAATAATTG GTATCTTTTC CTCCTTAAAT GTTTCATACA ATTCGCTAGT GAAACAATCT 003360 003361 AGGCCTGTTG CTTTCTTTCT TGGAAGGTTG TTAATTATTC ATATATTTCT ATACTAGATA AAGAGTTATT TGAATTA |
Predicted Small Protein
Name | ENST00000377680.3_smProtein_185:379 |
Length | 65 |
Molecular weight | 6456.4265 |
Aromaticity | 0.03125 |
Instability index | 83.928125 |
Isoelectric point | 9.00665283203 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0270073995564 |
Amino acid sequence | MWGVLAGSGVAWRLLPAHRRRMQLGCPGGLEDSGLGSQGPPGPGAGNHICPQPQPPAPVI LAAP |
Secondary structure | LEEEELLLLHHHHLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEE EELL |
PRMN | - |
PiMo | - |