ENST00000411616.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000411616.1 |
Source |
Gencode19 |
Same with |
lnc-PHTF2-3:1,NONHSAT121695 |
Classification |
intronic(AS) |
Length |
476 nt |
Genomic location |
chr7+:78638304..78641593 |
Exon number |
3 |
Exons |
78638304..78638440,78640243..78640387,78641400..78641593 |
Genome context |
|
Sequence |
000001 TCCTTTGGCA ACTGCACCCC CTCTTCCTTC TCCTTTTTTT TCAATCTAAT ATGTGGGACA TACCAAGTGA TGAGATCCTT 000080
000081 TCTGGCATCC TAAGAAAATG CCAACTATAG AACAACAGAT GTAGTCTCCT TATTAAGTCT GAAGACCAAA CTTCTTAGTG 000160 000161 CAAAGCAGTC AAGTCTTTTC TCAACATGAC CCCAATCAAG CTTTTGAACT TAACATCAAA ATATAACTTC AGAAGAACGT 000240 000241 TTGGAATAGA GCTCAGTTCA AACTCTTCCT ATTGCAAACG AGGAAATGGC TATAGAAGCA GAGTGCCCAA AGAATGCGAA 000320 000321 TGCAACTGGC TTCATCTTGA AAGCGACACT CTGAAGAAAT TACCCATAAT TTCTCCCTCT TGGACATGCA GAATTATCCT 000400 000401 GTTCTTGTAT TTTTCTGGCC AGCTTCTCCA ACTTTCCCTT TCTTGTTTGC AACTAATTAA ACTTTATGGA TAAGAA |
Predicted Small Protein
Name | ENST00000411616.1_smProtein_185:472 |
Length | 96 |
Molecular weight | 11038.8882 |
Aromaticity | 0.115789473684 |
Instability index | 54.2873684211 |
Isoelectric point | 9.54168701172 |
Runs | 11 |
Runs residual | 0.0132615002072 |
Runs probability | 0.0572176454529 |
Amino acid sequence | MTPIKLLNLTSKYNFRRTFGIELSSNSSYCKRGNGYRSRVPKECECNWLHLESDTLKKLP IISPSWTCRIILFLYFSGQLLQLSLSCLQLIKLYG |
Secondary structure | LLLLEEELLLLLLLEEEEEEEEEELLLLLLLLLLLEEELLLLLLEEEEEEELLLLLLLLL LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiTTTTTTTTTTTTTTTTTToooooooooooooo |