ENST00000411616.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000411616.1

Source

Gencode19

Same with

lnc-PHTF2-3:1,NONHSAT121695

Classification

intronic(AS)

Length

476 nt

Genomic location

chr7+:78638304..78641593

Exon number

3

Exons

78638304..78638440,78640243..78640387,78641400..78641593

Genome context

Sequence
000001 TCCTTTGGCA ACTGCACCCC CTCTTCCTTC TCCTTTTTTT TCAATCTAAT ATGTGGGACA TACCAAGTGA TGAGATCCTT 000080
000081 TCTGGCATCC TAAGAAAATG CCAACTATAG AACAACAGAT GTAGTCTCCT TATTAAGTCT GAAGACCAAA CTTCTTAGTG 000160
000161 CAAAGCAGTC AAGTCTTTTC TCAACATGAC CCCAATCAAG CTTTTGAACT TAACATCAAA ATATAACTTC AGAAGAACGT 000240
000241 TTGGAATAGA GCTCAGTTCA AACTCTTCCT ATTGCAAACG AGGAAATGGC TATAGAAGCA GAGTGCCCAA AGAATGCGAA 000320
000321 TGCAACTGGC TTCATCTTGA AAGCGACACT CTGAAGAAAT TACCCATAAT TTCTCCCTCT TGGACATGCA GAATTATCCT 000400
000401 GTTCTTGTAT TTTTCTGGCC AGCTTCTCCA ACTTTCCCTT TCTTGTTTGC AACTAATTAA ACTTTATGGA TAAGAA
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Predicted Small Protein

Name ENST00000411616.1_smProtein_185:472
Length 96
Molecular weight 11038.8882
Aromaticity 0.115789473684
Instability index 54.2873684211
Isoelectric point 9.54168701172
Runs 11
Runs residual 0.0132615002072
Runs probability 0.0572176454529
Amino acid sequence MTPIKLLNLTSKYNFRRTFGIELSSNSSYCKRGNGYRSRVPKECECNWLHLESDTLKKLP
IISPSWTCRIILFLYFSGQLLQLSLSCLQLIKLYG
Secondary structure LLLLEEELLLLLLLEEEEEEEEEELLLLLLLLLLLEEELLLLLLEEEEEEELLLLLLLLL
LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL
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iiiTTTTTTTTTTTTTTTTTToooooooooooooo