ENST00000411989.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000411989.1 |
Source |
Gencode19 |
Same with |
lnc-ERG-2:8,NONHSAT082120 |
Classification |
intergenic |
Length |
1790 nt |
Genomic location |
chr21-:40110945..40114441 |
Exon number |
4 |
Exons |
40110945..40111253,40112240..40112338,40112808..40112992,40113245..40114441 |
Genome context |
|
Sequence |
000001 GACATGGGAC CAACATAGCT GCCATGATGA TCCAGAGACT CCTGCCCTGC AGTTGCCGAT TAAGGTCTGA GAAGTCCTAT 000080
000081 AGTCAAGAGA CCTACTTAAT TTCTATAAAC TCCATATTGC CAAACCTTTA TGTAATAAGT TTTGATACCT CTCAAAACTT 000160 000161 CTGCAGTCTA CACTTGTGGA AACACTATCG TTTCATAAAC CCAGCAATTC AATGTAAATT TATCATTGGC TTCCCTAAAG 000240 000241 TAATTGCTTG GGAGCTCTTG TGCTTGGAGA GTTTGGAAAC ACATTAGTCT TTTGCAGAAA CGAGTTAGGG CAGCTGGGGA 000320 000321 AGATGACCCT GTTTTCCCTC CCTTCTCTAC TTCTTCCTCA AATGACTGGT ATCTCGAATT TGCATAACGG AGGCCAAAAG 000400 000401 GTTTTGTGCT ACAATAAAAG ATAAGACTTG AAGAACAAGT CCCAGATATG ACCAGGAGCA TGCTTGAGAG TCAGCGACAT 000480 000481 GCAAGCGAAT GATATGAGAA GTAGCTTGAG GGTGGATCTT TGTCCAGGGA GGAGAAGGGT TGAGGGGCTC TTGGAACCTA 000560 000561 GATATTTGCA GTGGAAGCAG CACTGGGCTC CTTGGCAGAT GACTGCTCTT TGTACTCAGG ATAAAACCCA CATTTGCTGC 000640 000641 CCAGCATCTG AGGCCCTGCC TACCTTGGGG ATGTTGTAAT GTTTTTCTTC CCCCTTAGTT CCAGCCACAC TAAGGTTTTG 000720 000721 AGCCTGAGAT CACCAGGCTC CCTGAGTCCT TGGCCTGTAC CCTCACCTGC AATGTTGGTT TCCTCAACCC CTCAGATCTC 000800 000801 TTACTTAATG CCCCTTCCCT TTAAGGTGCC CCTTCACTTA ATTTAAGGGC ACCTCCCTTC CTGCTATCTT TTTATTTGTG 000880 000881 TGCTCTCTTG TTTCCTGTTT CCTGATTGAG AGTCACCTCC TGGATGGCAG TTCAGCTCTA CTGTGTCCCC ATTGGAGACG 000960 000961 CAGGCCCCAC TGCCAACCAC ACAAGAAATA GGCTCTGAAA TATTTGTTGG ATCCATGAAT GGTTGATTGG CTTTCATTGG 001040 001041 GCTGCTGGGA GGATTAAATT ATGAATGTAT AAAGGTGATT ACATCTCATT CCTATATACC CATTACATTG ATGGATAAGT 001120 001121 ATTAGGTTCT CTCTCCTCTT GCCAGGGACT TTAAGAAGCT GCTGAAGAAC CCAAGAGGAA GGTGGGAGCT GTTGATGGTG 001200 001201 TGGAATTAGA GGCCTGATGG AGTGGAGAGC TTTCCTCCTC ATCACCTGGG TCAGGACCAT GGAGCTCCTT GAGCCTTGAG 001280 001281 ATTCCAGGCC CAGGAGCACA TCATCATTGT GCTTCTTGGG GCCCAGGCGC ATCTCCTAAG AACTTGTTCT TAGACATGTT 001360 001361 GTGCTCAAAC TTGTGGCATC ATAGCAGTAA TAGTTTACAA TATACCTACA GTTTCCTGGG CAGATCATCG TGTGCAGACC 001440 001441 GGCTGCAGAG AGAAGGGAAC TGTTTCACTT TCATCTTCCT GGGCCATTTC CAGATATGAA TTGCAGAGAC ATATTTCAAT 001520 001521 ATATCCTCAC CCAAATATGC TTTAGAAGTA CATTTCTTTT AATGTAATAA GATTTATGTC CTTTGTGTTT GTTTAGAGGG 001600 001601 TAAATCTGGA TTTGTATTTT TAGAAGTTAC TTTCACCAAA GAAATTCGAA AGAAATAGTG TTTCAGAAAA ATCAAAACAA 001680 001681 GCCATAGAAA TCTAATATGT TTCAGATACT ATATTGGGCT GCATGAAGAC TAAATCCATA ATATGTATGA ATAATGTATT 001760 001761 CTAAAGTAAA TATCATATTT TGTCAAATTA |
Predicted Small Protein
Name | ENST00000411989.1_smProtein_23:286 |
Length | 88 |
Molecular weight | 10285.0197 |
Aromaticity | 0.126436781609 |
Instability index | 45.6689655172 |
Isoelectric point | 8.33441162109 |
Runs | 14 |
Runs residual | 0.0226600985222 |
Runs probability | 0.0276326746915 |
Amino acid sequence | MMIQRLLPCSCRLRSEKSYSQETYLISINSILPNLYVISFDTSQNFCSLHLWKHYRFINP AIQCKFIIGFPKVIAWELLCLESLETH |
Secondary structure | LHHHHLLLLLLLLLLLLLLLLEEEEEEHHHLLLLEEEEEELLLHHHHHHHHHHHHHHHLH HHHHHHHHLLHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLHH HHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiTT TTTTTTTTTTTTTTTTooooooooooo |