ENST00000527960.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000527960.1

Source

Gencode19

Same with

lnc-ALX4-4:3,NONHSAT018966

Classification

intergenic

Length

547 nt

Genomic location

chr11-:43933997..43942444

Exon number

2

Exons

43933997..43934034,43941936..43942444

Genome context

Sequence
000001 ATAGGGCTAC TGAAACACAA GGTGACGAGA ACTATTAGGC AATTGAGTGC ATTCCCTGCA GGGCTGCTCC CACTTCTATC 000080
000081 TGACTTGGGT CTAGATGACT CAAGTGATTC CCGAGGGGAA AATAATCTAT GTGGAACAGC TGTCATGAGC AGGCCTTCTG 000160
000161 CTGCTCTTCA GCCTCAATTT CAGCCTGCTA CTTCCCGTGA CATCATTCAG TGATTCCTCC CTTTAAGGGG ACAGTTTTCT 000240
000241 CTTGTATTAC AGGTGACTAC TTGAAGGTGG CTAGACGAGA GCATACTGCC ACCACTCTTT ATTTGGAGGC CTGTAACCTG 000320
000321 TCTTGAGTGT GTTGCAGGAA GACTCAGTTA CAGTGTTCCC TGAATATGTA GCTTTCCATT ACAATAGTAT GCAAGCCAAG 000400
000401 ATGAAACCAC CTCTGTTTGG GTTTCAGCAG CTGTCTGCCT ACGGAAGGCT CCAGAGTCCC TGACGCATAT TTATATCTCC 000480
000481 ACTTCACTGA AGTCACAAGG AACAAACACG TTCACAGGAA GCACCTGGCA CACAGTAACT ATTATTA
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Predicted Small Protein

Name ENST00000527960.1_smProtein_128:199
Length 24
Molecular weight 2572.8917
Aromaticity 0.173913043478
Instability index 87.5043478261
Isoelectric point 5.22161865234
Runs 6
Runs residual 0.0331262939959
Runs probability 0.0313696048991
Amino acid sequence MWNSCHEQAFCCSSASISACYFP
Secondary structure LLLLHHHHHEEELLLLLLEEELL
PRMN -
PiMo -