ENST00000558441.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000558441.1

Source

Gencode19

Same with

lnc-FMN1-1:1

Classification

antisense

Length

1738 nt

Genomic location

chr15-:33009471..33011208

Exon number

1

Exons

33009471..33011208

Genome context

Sequence
000001 AGAACACAGT TTAAGGGGTG CGCGCGGAAG TGGGAACCAG CCGGTGGCCG CTGCCCGGCG CCAGAACGTC TACCATTCAG 000080
000081 CCCGGGCGTG CGCGGGGCGG GGAAGAGGCT GGAGTAGAGA AGCGAGCGCC CGCGAGTGCG TGGCCGGTCC GCGAGCGCGT 000160
000161 GTGGTGTCTG CCTTGTGAGC ACTGCGGGTT CGCTGGACCC CGCGGCCAGG GCCGCGCCCC GCACCGCAGC TGTCGGATTA 000240
000241 CCCACCGTTC GGTTTTCCGC TGTGGCTGAA CACAGCGGCT CTGCCCTTGC CAGTCTCCAT CTCACCTCGG GGATCGGCAA 000320
000321 ATGCACACAT CATGGATTCT CCGGATGCTC CAACCCGCGG ACTCCAATGG GCGCCCCAAG ACGCCCCCAG ACCCAGCGCG 000400
000401 GCGCCCCAAG CACATGGGAC CCTCTCAAGG CAACTCGCCG CGCAGTCAGC GGCCGACTAG CAGGTCCGGA TGCTCCTGCG 000480
000481 CTCTGGCGGC CTGGACTTCG CGCCCTCGCT AAGCGGGCGC GTCTGCCAGG CGCTGCTGCC ACCAGCACCA GGAGCGTGTT 000560
000561 CGGGGGCCTC CGGGAGGTGG AAACGGGATG TGGGGGTCAT CCTGCCCGCT CCTGACAACT TTTTTTCCTA CGTTTCCCTG 000640
000641 CAGACCCAGA GCAGCGAGGT CACGGTGTCC GCGGCCTCAG CAGGAAGGAC CCCGCGATGG TTCTTCACAA TTCACCCCCG 000720
000721 CGAACAACGC ACCCGAGCCT GCGCGCACGG AGGGCTGCCG CGCGTGGAAC TGAGCGGGTC CTGGGTTGGT TTGCGGCCCT 000800
000801 CTTCCCTCCG CCCACTCACA TCCCTGCCGG GTGCGTCCGC GCTCACCTGT CAGTGCGGCG GGTCCTCGGG GCCTGCGCTT 000880
000881 TCGACGCGTG GCGCTGAGTG CGGCCGCGGC CAGAGCCGCC GGGGCTCGGC GCGGGGTCAG CGGGACCGAG AGTGACGCGG 000960
000961 CGGCCGTGCA CTGGGTCGCC CGGTCCGCGG AAGGCGCACC GAGTGCCAGG CATCGCGCCG TCTCCCGTTT AAATGCCGGC 001040
001041 GGCAGAGCGC GGCGCCCGGG GCCGCGCCTC TCCATTGGCC AGGCGCCGCC GCCGCCGCCA GACCCGCTAT CCGCCCCCTT 001120
001121 TCCCGGTACT GCCCCCGCCC CCCGCACCCC TCCTGCTTCC CCGCGGGGTC CCCTCTCCGC CCGCCTCGCC TCTTTGTCTG 001200
001201 CTCCCCCCGC CCGGGCCGGC TGGGAGAGGT CACCCCAGGG AACCGCGCCT GGAATGCACA GCAAATCACA TTTTCCGCTC 001280
001281 CCGTTGGAGA GGGAAGAGCG GGAGGAAATC CCCCCGGCTG GCGGCCCCTC ATTCCTTCTC TGCCCCAGGT CTGGGCTTTC 001360
001361 CCTGTCGGCC GCCCGGCATC GCCTGCGTTG GTCCCGCGCT CAGTAGCGGA GACTGCGCTG GGAAGAGCGA GATCTCCGTG 001440
001441 GGATCGTGCC AGATTCGGCC ATTCTTCCCC TCTGGAGGGA ACGGGACTGC GGGATGCTCT GGTCGAGCGG CCGTCGTGGC 001520
001521 TCCCCGGCGG CCCCGCCCGA GGCCCCCAAC TTCGAGGGCG CTGACCCCGG CGCCCCCGTT AACCTGGCGG GCTCGCTGGC 001600
001601 CGCCAGCAGG AGCCTGTCGC CAACATGACA CCCTGCTCTC CTCGCCCGCC AAGGGTTCTT TCAGCCCAGA TGCCGGCGGC 001680
001681 CTCCCCTGTG AGTGTACAGA GGGGAGTCAC GGGAGGAGAA TAAAACTAAA TGACCGTC
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Predicted Small Protein

Name ENST00000558441.1_smProtein_320:511
Length 64
Molecular weight 6964.8594
Aromaticity 0.031746031746
Instability index 95.9587301587
Isoelectric point 11.9083862305
Runs 7
Runs residual 0.0338516358925
Runs probability 0.014194867136
Amino acid sequence MHTSWILRMLQPADSNGRPKTPPDPARRPKHMGPSQGNSPRSQRPTSRSGCSCALAAWTS
RPR
Secondary structure LLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLEEEL
LLL
PRMN -
PiMo -