ENST00000589905.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000589905.1

Source

Gencode19

Same with

,

Classification

intergenic

Length

785 nt

Genomic location

chr18+:61034561..61048862

Exon number

2

Exons

61034561..61035092,61048610..61048862

Genome context

Sequence
000001 AGGCCGCCAC CGCCACCGCC ACCGCCACCA CTGCCAGAAT CGCCTCTCGG GGGTCGCCGG GTGTCTCCCA CTCCCCCGGC 000080
000081 CTCGGGACGG GGCCCGCAGT CCGCAGCCTC TCCCGTGGAA ACCGGGCCTC CCGTCCCTGT GCGTCGCGAG CGGGCTCCGG 000160
000161 ACAGCGCCAG ATGCGAGCGC GCCGGGAAGG GCTGCGAAGA CTCGCTCTTC GGGAGCTCGA ATGGCTTCTT AGGACCCCGC 000240
000241 AGGGCGGGTT TCCAGGCCTG CCACGGCCTC CAGTGTGGGC GTGACGAGCG CTCCTCCCTG GAGTTCAGCC CTCGGCTTGG 000320
000321 GACTGCCCGC TGGGTTGCTC GGAGGCCCCG GAGCATCGGA AAGGGCGGCT GGAGGCTCCC GGAGCGGGCT CAGCCTGGGA 000400
000401 GCCCAGCGAC TACGCTCTGA AATCCCGGGC TCCATTCCAT ATTTTTTGGC GTTTTTAGAA GATGGTCACG GCCCACTTTC 000480
000481 GCTTTTCAGA GGACCGGAAA GCCTTAACAG GGAGTTTTGA GGAATCACTA AGAGGCATTG AAGCTTCCGG GATTGGGAGT 000560
000561 AAGCTGCCAT GGAAAGAAAC TCAGGCTGGA CTACTGCATG ATGAGAGATC ACATCAAAGA GAACAGTCCA GCCAGCCCAA 000640
000641 CTTGAGACAC CAGACATGTG ATGGAGCCAT CTTGGATTCC TCACCCCAGC CAACACCATG TGGAGCAGAG GCAAACCCTC 000720
000721 TCCATGGAGT TCTGCCTGAA TTGCAGACTT GTGAATAATA ATAAATGGCC ATTTTAAGCC GTTAA
[back to top]

Predicted Small Protein

Name ENST00000589905.1_smProtein_461:757
Length 99
Molecular weight 10750.7674
Aromaticity 0.0408163265306
Instability index 58.8255102041
Isoelectric point 5.46307373047
Runs 13
Runs residual 0.00638947167652
Runs probability 0.0346296522767
Amino acid sequence MVTAHFRFSEDRKALTGSFEESLRGIEASGIGSKLPWKETQAGLLHDERSHQREQSSQPN
LRHQTCDGAILDSSPQPTPCGAEANPLHGVLPELQTCE
Secondary structure LEEEEEELLHHHHHHLLLHHHHHHHHHHLLLLLLLLLHHHHLLLLLLLLLLHHHLLLLLL
LLLLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -