NONHSAT000335
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT000335 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1365 nt |
Genomic location |
chr1+:1533411..1536379 |
Exon number |
3 |
Exons |
1533411..1534678,1536037..1536086,1536333..1536379 |
Genome context |
|
Sequence |
000001 CATTTAGACA CTGGCGCCAG GTTTGCGCCT GACCGGCGCC ACGCAGGGGT GGGCGGAGCA AAGACACACA GGTGGGCTAC 000080
000081 AGGTGTCACA CGGCACCAGC CAGGGCCCGG GGTGGCTGGG GTGAGGATGG GTGTTTGGCC AGTGACCAGG AGTCAGGTCA 000160 000161 AGTCCAGGTG GTCAGTGCCA GGGGCTCCAG GAGGGGAGGG CAGTGCCATA ACCCTCCTGG TGTCCAGCGT CACCAGGCGG 000240 000241 TCGTCACAGA AAGCAACCTC GGCCCGGGGC CCGGGTCTGC AGCAGGTGGG CAGGGTCAGC TTTTCTTCCA TGGCGGGTGG 000320 000321 CATTGTCTGG GCCGGATACT GGCTCTCGAC CCCTGGGCAT GCAAAGGCTA GGGGTGGTGC TGTCAGTCAC ACCGTTGCCA 000400 000401 CCAAGGTCCC CTGGGTCGGC TGAGGCTTGG GATCCAGGCA GCGGTGGAAG GTCGGGCTGC TCAAGGCCGG TATCTAAGCT 000480 000481 TCTGCCCTGG GACCCAGTGG TGATGGCCGC CATCTGCCCC ATTCCCACAG GGACCTAGTC AGAGGTCGCA CACACAAAAG 000560 000561 GGGTACCTGG CCCTGGAGAA CCACCAGCTG CCCGGGGTCT GAGAACACTC ACCCTGGCCG CTGGGCCAGG CCTGCCAGGC 000640 000641 TCCCGGCTGG TCCAACACCC TAAACGGTAC AGAGCGCTGC AGGCCCTCAC CTCATGCTTC TGCAGCGCTT GAGGGTGAAG 000720 000721 GTGTCTCCAA GGGGACGCTG GCCAGATGCA TGGAGAGGCC GGCCAATCTT AGGGCCACAG ACCCCCCCTG GACAGCAGAG 000800 000801 GGTGTTGGCT CCTGCAGTGG GCCCGAGATA CTAAGGCACG AAGCTAACCT AAGCCCAGTG GGGTGGGGCG GGGCAGGACA 000880 000881 GGCTTGGAGA GCTGCGCCCC AGGCCTGCAA AGCACAGTGA CCGAGCAATG GCGACGGTCT GTCTGGGACA ATTCGGCACA 000960 000961 GGATGGAGGT GCGGGGTGAG CCGGAGTGCC CATGGCTCTT GCTGGAAGGG GCTCCATGCC CTGGCCGCCT CTATAAAGGC 001040 001041 CTGCGGAGAG CGGGGAGAGC CCTGGATGCG GCTGGCACAG CAGCGCAAGC CCAGGGGCCA ATCCGGGGCC AGAGTCTGGG 001120 001121 AGTCTGACGC CCGGCTGGAA AGGGCGTGTG ATGATGCCAA AGTGCCGGAG CCGTCGCCGG CAGGTCCTCC TCCGCGGGGA 001200 001201 TCTTAAGGAG GCAGCAGGAA TGAGGAGAGG AGAGCGGGCG GAGGACCTGG GAGCTCAGGC GCCCTCAGGA CGGACAGCGC 001280 001281 CCACCCGGAG GAAAGCCTGA CAGATGAGAC TTCGCAAGAT CACCCAGCAA CCAGGACACC CCTCCAGGGC CAGGACTACA 001360 001361 GCCAG |
Predicted Small Protein
Name | NONHSAT000335_smProtein_749:919 |
Length | 57 |
Molecular weight | 5855.4788 |
Aromaticity | 0.0535714285714 |
Instability index | 67.0803571429 |
Isoelectric point | 6.52679443359 |
Runs | 8 |
Runs residual | 0.0104410616706 |
Runs probability | 0.0376037802509 |
Amino acid sequence | MERPANLRATDPPWTAEGVGSCSGPEILRHEANLSPVGWGGAGQAWRAAPQACKAQ |
Secondary structure | LLLLLLLLLLLLLLLLLEELLLLLHHHEEELLLLLLLLLLLHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |