NONHSAT000615
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT000615 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3967 nt |
Genomic location |
chr1-:5922871..5927712 |
Exon number |
3 |
Exons |
5922871..5924093,5924398..5926518,5927090..5927712 |
Genome context |
|
Sequence |
000001 GGCTTCATGC CCTGGTGCTG TCAGAGCAGC ACGTGGGGCC TGGGGAATTC TCTCTCCTGC CTTTATGGTT TGAAACGGTG 000080
000081 TCCCTCTTGC CACCTCTGAG ATGACTAGGT GCGCATTTGC CGGCTGAGTC TGCCCTTCTA AAAAATCCCA GCTCCCGCGG 000160 000161 CCCAGGTCCA GGTGTGCCTG GAGGAACACC TACCTCCTCA CCTGACGGCC CGCGTGTTTC TGGTAGGTGC CCCTTACAGC 000240 000241 AGAGTGCAGG CTTCCCTGCT CCAGGGAGCT GTGTTTTCTT TTTTGTGGCC CCCTCGATTA TTCCCTGTGG AGATGGCTGC 000320 000321 AGCCGAGCCG CAGTGGGCTG GATGGGCGGT GTCCATGCAG GGAACACAGT GCTTGGATGC TGTCCTGGGA AAGGTGGCGG 000400 000401 CGTCCGTTTC CCCAGCAGGT GTCTTGCTGA GCACCTGTGA CGAGCCTGTC CTGTCCTATA GTGTGTAATG TGTGGGGCCT 000480 000481 TCTCCACACA GGCTGGGGCT GTGGAGAAGA CTCTTTTTGA CATTTCCCCT GCTCCAGGTG CTCCGGTGGG AATGCTTGGT 000560 000561 GAGGACCCCC CAGTCCATGT TCGCTGCAGC GACCCGAACG TCATCTGTGA GACCCAGAAT GTGGGCCCCG GGGAACCACG 000640 000641 GGACATATTT CTGAAGGTGG CCAGTGGTCC AAGCCCGGAG ATCAAAGACT TCTTTGTCAT CATTTACTCG TAAGTGCACA 000720 000721 GGCTTTGGGG ACCTGGAGGC GGTGGCGGAG GAGAGGAGGA GGCAGGCCTG GGGCTGCTGG TGGATTGAAA GTGGGCTTGG 000800 000801 CCCCTTCCTA AAATTGGGGG AGCTTTCGGG CCTTCGCTTT GTGAGGCGGG ATTCTGCTGC GAGTTCAGGG CCCGCAGGGG 000880 000881 TCTAGGGAAG GCACCTTGGA GGGGCACGTG CAGCCTGAGG GACTTGGGAT GCAGCTCCTG CCACCAAGGA GAGACACCAG 000960 000961 TCAGCCTCTG TCCCCAGATA GTGGCAAGGG CCACCCAGAA GCCCCTCATT ACCTTTTTCT TGCTGAGTCC CTAGGCTGAA 001040 001041 CAGCATGAAT GAAGCTGTGG TCCCTCCTGC GGAGAGGCag gactgtggtg gaaatgccca tccctctctc ctccaggcta 001120 001121 aatgacccgg cccctttccc ctcccctcct aagtcggatc cccaagccct gtgagaatcc ttTCAAACTG GTGTGAGCTC 001200 001201 GGAGATTTCC TGCAGTGCTT CTGAGGATGG GGCAGGGGCT AACCTGCACT CAGTGCCCAC CACAGAGGGG CCACGTGACC 001280 001281 ACGTCTCAGA GTGGCTTCCT CGTGAGCCCA TGAAGATGCC TCACCCAGCC CCATTTGACT GTGAAGCAGC AGGCTCTTGG 001360 001361 CCCTAAAATG CTAACAGGGG CTTCCGTGCT CAGGCCGGCA TGACCTCCAG CCCCACCCTG TCTCCTGCGT GGCGCTGCCC 001440 001441 TTGGCTTAGC CTCAGAACCC CTATTGGGGG TGGACACTTG TCCAGGATGT GTGTTTGGCC AAAGCGTGCC TTGTCATTTG 001520 001521 TTTGACATGT GGTTCCTAAG CAGCCCTGCT GCGCCCTGAG AGCCTCTGCT GTGGGTGGGA GATGGGCAGC CAGGGGTGGA 001600 001601 GCCACCAGGC CCTAGCTCTG CCTCCTGGGG CCTGGTCCTC CGGGGCTTTC CCTGCGTGGC CCCAGCTCTG CCTCCTGTGG 001680 001681 CCTGGTCCTC TGGGGCTTTC CCTGCACAGC CTCCTGTCTG CCCACGCTCC TGGCAGCCCT TGTTGGCCTC TCGTGGGCCG 001760 001761 GTGCTGAGTC CTCCGGGACA AGTGCAGATG GCTCCCATCC CACTGCAGGG ATCGCTGGCT GGCGACACCC ACACAGACGT 001840 001841 GGCAGGTCTA CCTCCACTCC CTGCAGCGCG TGGATGTCTC CTGCGTCGCA GGCCAGCTGA CCCGCCTGTC CCTTGTCCTT 001920 001921 CGGGGGACAC AGACAGTGAG GAAAGTGAGA GCTTTCACCT CTCATCCCCA GGAGCTGAAG GTACGGCCTC TCTGGGGGCT 002000 002001 GTTCTGAGCC TCTCCCCAAC CCCAGCCTGG AGACGGGCAG TGGGCATTCA GCTGGAGCAC AGTGGGTGGC CCTGACAGCA 002080 002081 GCTTTTCCAG CGCCTCCAGC GCGCAGACGC TGTTACCAGA GGCCTCTCGG CAGTTGCCTT TCGTTAGATG TGCCATTGTG 002160 002161 GGGTGAGTGA CGTACACACC AACCCCAAAG GCCGGTGTTC AGAATTCCTG GCAAGGTGAA CAGTGACAGG AGCTCTGGTG 002240 002241 TTAGTGAAGC CACAGTTAGA CGGGGTGGGA GGGCGGCCCC TGGTGCCACC AGCTGGCCGG GGTTTTAAGC CCAAGATGGC 002320 002321 TTCAGTTCTG TCTGCGGAGG CAGCGCTTAG GGAATAGTCG CCGTGTGAGA GGAGGGACTT GCCTGGTGTG GACCCAAGTC 002400 002401 GCGGCCACAG TCATGTCAGG GTTGGTTGTG GCCTCAGATT TGGCCGCCCC GGAACCACCC ATGACCTTGG GCTCCCCTGG 002480 002481 CTGATTGGGC TGCAGGCGCC CAGGAGCCCC TTGCTTGCAC ATCCTGAGAG GCTGTGCTCT GACCCGCCTC TCTCGCTCTT 002560 002561 GAAGACAGAC CCCAAAGGTG TCTTCGTGCT GCCGCCTCGT GGGGTGCAGG ACCTGCATGT TGGCGTGAGG CCCCTTAGGG 002640 002641 CCGGCAGCCG CTTTGTCCAT CTCAACCTGG TGGACGTGGA TTGCCACCAG CTGGTGGCCT CCTGGCTCGT GTGCCTCTGC 002720 002721 TGCCGCCAGC CGCTCATCTC CAAGGCCTTT GAGATCATGT TGGCTGCGGG CGAAGGGAAG GGTGTCAACA AGAGGATCAC 002800 002801 CTACACCAAC CCCTACCCCT CCCGGAGGAC ATTCCACCTG CACAGCGACC ACCCGGAGCT GCTGCGGTTC AGAGAGGACT 002880 002881 CCTTCCAGGT GTGGTGGGGC TGTGCCTGGG ACTCCTAGGG GAAGACCCGG GGACCTGAAT GGAGGGCAGT TAGCCTGCAT 002960 002961 TTAGGAGCGA GTTCCTCAAA TCACCAGCAG TCTTCCAAAA GCCCCAGGGC GGTGACAGGT ACCATCCCAT AGTTGGGTGG 003040 003041 GCCCGTTGTA TCTTTAGTAG CTGGAGATTT AGCAAAGTTT CTCCTGAGTG TGGGAAAGGG TGTTGTGCCC AGGGCTTTTC 003120 003121 ATGGTAATGT TAGACAGCTC AGTCTCGGAA ATAAGTGTGC CTTCGAGTCC AAGTAACGCG TCACACTGGC TGAGCACTGG 003200 003201 TTCCCATCCT TGTACCGGGC GCTGAAGTCA AAGGCAGGCC TTGGATGCAC CCGCAGGGCT CCCCTGCCTT GTCAGCTCCC 003280 003281 CTTGGAAATA AACACGACCA TGCAGAGAGG TTGCTGGTGA GAGCGTGGGA CAGCCCGGGG GTGGATGCTG GGATTTGGAT 003360 003361 GCTTATTTCC AGGTCGGGGG TGGAGAGACC TACACCATCG GCTTGCAGTT TGCGCCTAGT CAGAGAGTGG GTGAGGAGGA 003440 003441 GATCCTGATC TACATCAATG ACCATGAGGA CAAAAACGAA GAGGCATTTT GCGTGAAGGT CATCTACCAG TGAGGGCTTG 003520 003521 AGGGTGACGT CCTTCCTGCG GCACCCAGCT GGGGCCTGTC TGTGCCCCTC CTGCCCTGCA GGCTGTCCTC CCCGCCTCTC 003600 003601 TGCAGCCTTT CACTTCAGTG CCCACCTGGC TGACCTGTGC ACTTGGCTGA GGAAGCAGAG ACCGAGCGCT GGTCATTTTG 003680 003681 TAGTACCTGC ATCCAGCTTA GCTGCTGCTG ACACCCAGCA GGCCTGGGTT CCGTGAGCGC GAACTCCGTG GTGGTGGGTC 003760 003761 TGGCTCTGGT GCTGCCATCT ACGCATGTGG GACCCTCGTT ATCGCTGTTG CTCAAAATGT ATTTTATGAA TCATCCTAAA 003840 003841 TGAGAAAATT ATGTTTTTCT TACTGGATTT TGTACAAACA TAATCTATTA TTTGCTATGC AATATTTTAT GCTGGTATTA 003920 003921 TATCTGTTTT TTAAATTGTT GAACAAAATA CTAAACTTTT ACACGTC |
Predicted Small Protein
Name | NONHSAT000615_smProtein_1787:2074 |
Length | 96 |
Molecular weight | 9743.8135 |
Aromaticity | 0.0315789473684 |
Instability index | 77.1652631579 |
Isoelectric point | 5.09674072266 |
Runs | 13 |
Runs residual | 0.00779113137174 |
Runs probability | 0.0423206011441 |
Amino acid sequence | MAPIPLQGSLAGDTHTDVAGLPPLPAARGCLLRRRPADPPVPCPSGDTDSEESESFHLSS PGAEGTASLGAVLSLSPTPAWRRAVGIQLEHSGWP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELL LLLLLEEEELEEEELLLLHHHHHHHLEEEELLLLL |
PRMN | - |
PiMo | - |