NONHSAT001338
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001338 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2493 nt |
Genomic location |
chr1+:20356772..20359646 |
Exon number |
2 |
Exons |
20356772..20358327,20358710..20359646 |
Genome context |
|
Sequence |
000001 CAGGGAAACA TGTGAGCAAA GGTCTCTGTG TCATAAATAA GGTTAAGGAA AGGAGCTGTG CCTTGATGTG AGAGTAGGCC 000080
000081 AGATTTATGT TTGACTTTAC ACAAGCATCT CAGTGCGGTA AAGAGCAGTA TTGCCACCAG CATGTCTCAC CTCCAGCCAT 000160 000161 AAGGCGGTTT TCTCCTATCT CAGTAAATAT AATGTATGAT CGAGTTTTAC ACCGAGACAT TCCATTCCCA GGGATGAGCA 000240 000241 GGAGACAGAT GCCTTCCTCT TATCTCAATT GCAAAGAGGC CTTCCTCTTT CACTAATCCT CCTCAGCACA GGCCCTTTAT 000320 000321 GGGTGCCGGG CTGGGGGATG GTCAGGTCTT TCCCTTCCCA TGAGGCCATA GCTCAGGCTG TCTCAGTGGG GAGAATCCTT 000400 000401 GGACAATACC CAGGCTTTCT TGGGCAGAGG TCCCTGCGGC CTTCTGCAGT GCACTGTGTC CCTGGGTACT CGAAACTAGA 000480 000481 GAATGGTGAT GACTTTTACC AAGCATACTG CCTGCAAACA CATTTTTAAC AAAGGACATC CTGCACAGCC CTAAATCCAT 000560 000561 TAAACCTGGA GTCAACACAG CACATGTTTC TGTGAGCACA GGGTTGGGGC TAAAGTTACA GATTAACAGC ATCTCAAGGC 000640 000641 AGAATAATTT TTCTTAGTAG AAAACAAAAT GGAGTTTCTT ATGTCTTCTT TCTACATAGA CACAGTAACA GTCTGATCTC 000720 000721 TCTTTCTTTC CCTGACAGTT GTTAGTAAGG GTATCCCCTG TGAAGGCTTG TTGGTCAGGG AGGAGATGAA GGCTGTTTGG 000800 000801 TTTTGGAGAG ACAGAGAGAG GGAGAGAGAG AAATGGGTTT TTGTAATTAA TAGCCATTGT GGTTCTGATA GGGCTGAAGG 000880 000881 ATATAGGTTG CAGTCGAGAG AATGGATTGG CCGACTAGGT GAGATGTAGG TTTATTTTGG ACCGGGTTCG TGTGGTTAGA 000960 000961 TTAACAGGAA GGGCTGTGAA CAGCTGGATT TGTGTGGACA AACAAATCTA ACAGTTGGAA AAAAGAGGGG ATCGTGACTG 001040 001041 ATTTAAGAGG TAATGTATGA AGTTGACAAA GGGGGCCCTA CTGCCAGAGG CTGGGGGTGG AGACTTAGAG TATCTCACAA 001120 001121 AGAAGACAAA AGGAGATTTG AGTGGGAGAG AAATTTTGGA AGATACCCTG CAGCCATAGC TCCTGGATTA GTGTAGGAAA 001200 001201 TAGGAGTGGT CTATCCAGGG ATGTGGGGAA GGAATAACAG GAAAGATCTG AAACAATGTA CCAGATAAAA GATTTGAAAT 001280 001281 TGGAGGAAGA GAGTGTTATG GACCAGGGCC TCCTGGATTG GCAACTTCTG GAATTTTTGT TAAGTGCCGC TAGGTTAGTC 001360 001361 CTGTAAGAAA GGAAGAATTT TGGGGTGGGG GGTGTGGGGA GGGAATTTCT GGATGTAAAT TTGGTGCTCT TTTTAGTTTG 001440 001441 GAATGGTGTA TCCCGTGTAG AAAGGATGTT AGCTTTCCCG ATGTGGGAGT AATTAGAATA ACCTGGTGAG CACCCATCCA 001520 001521 CTTAGATTGG AGAAGGGAGG AGGAGAAGTC TGTGATTGTT TAGAGTCTTC GCTAGCTATT GGTTAACCTG TGAAACAAAT 001600 001601 GCTCGCCTGT TGTCTGACTG GATAGAAGAG GGGAGTCCAA ATGGGAGGAT AATGCGGGTA ATACAGAGAA TAGAAGTGAC 001680 001681 AGTGTGTGTG TGGTTTTTTT TTTTTTGATG GTGGTAGGAA AAGTTTCTGT CCATCCAGAG AATGTATCTA TTATTGTCAG 001760 001761 AAGGTACTGG ATTTGTTTTA CAGGGGGTCA TGTGAGTGAA GTTGATTTGC CAGTCAGTCT TGCCCTGGCA GGTGTCTTCA 001840 001841 GGCCTGGTGT GTGGGGAAAG GAGGTGGTTT GATAGCTCCC TGAGGGGAAG TTTGAGTGCA AAGGGAACAT GCCTTAGTAA 001920 001921 TATCTTTGAG ATTGGCAGTC ATGGCAGGAG AATGTGTATA AGAGTTGGCA TAGGGGGCGG TAACCAGTAT GAAAATGGTT 002000 002001 GTGTACATAT GAAAGTACAG AAGGTCCTGG AACTTGGGCA AGACAATTTT ATTACTGAGG TAAAACCATC CTCCTTCCTG 002080 002081 AATGGCATCA GCCTGGATGA GTGAGGTTTG TTCTTCCTGG GTATATACAG GATGTATGTT GGGAAAAATG GGCAGTAATG 002160 002161 ATGGGGTTTT AAGGGGTGCC TGCCAGGCTG CTGAATTTGC TAAGAAGTTT TCATTGGTTT TGGCATTTGT AGCCTTTTGG 002240 002241 TGTTCCTTGC AATAGATAAT GGTGGCCTTT AGTGGTGGTT CAGCCACCTC CAGCAGTTTG TGTATGAGTT TGCCATTTCC 002320 002321 TATGGGGATT CCTTTTGTAG TTAGAAAACC CCTTTTCTGC CAGATTAAGA CCTGAGAATG TAGGATATGG TATGCATATT 002400 002401 TGGAATTGGT GTAAATTGGT TAACCCTTTC CTTTTTCCTT TTGCTAGGAT GGGCAACTAG CTCCTCTTGT TGACAGGTAG 002480 002481 TTCTGCCTGT TGA |
Predicted Small Protein
Name | NONHSAT001338_smProtein_86:295 |
Length | 70 |
Molecular weight | 8149.3165 |
Aromaticity | 0.130434782609 |
Instability index | 92.0594202899 |
Isoelectric point | 9.01947021484 |
Runs | 11 |
Runs residual | 0.0200889654183 |
Runs probability | 0.035763035763 |
Amino acid sequence | MFDFTQASQCGKEQYCHQHVSPPAIRRFSPISVNIMYDRVLHRDIPFPGMSRRQMPSSYL NCKEAFLFH |
Secondary structure | LLLLLLLLLLLLLEEEELLLLLLLEEEELLLEEEEEELEEELLLLLLLLLLLLLLLLLLL LHHHHHHLL |
PRMN | - |
PiMo | - |