NONHSAT002344
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT002344 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3943 nt |
Genomic location |
chr1-:35641981..35647739 |
Exon number |
4 |
Exons |
35641981..35642077,35642920..35643002,35643590..35646224,35646612..35647739 |
Genome context |
|
Sequence |
000001 ATAAAATTAA TGTTTCAGTT TATTTTTCAG ATTACATGCC TTTCTTTATA AGGGATGCTG GCACAGACCC CCTAAAATAA 000080
000081 GCTTTTGGTA GTACTGTACC TTTGAAGAGT GGTGAAGGAT GCTAATGGAT AATCTCCTGA AAGTTGTGGC TTTTGATACC 000160 000161 CTTACTGTGG ACTGTAGAGT TGCTAAACGT TGTTTAGCAA ATAATGTTGC TTAGTTTCAA ATGACATTTG ACTTTCATCA 000240 000241 CTAAAACAGC AATGTACTCA GGGTTGTAAG CTTACTCAAA TAGACTTTCA ATAAGTCTTC AATGTATATA TGATAGTTTT 000320 000321 TAGCCTAATG TGAATTTAAA TAATCTTAAT AGTTTCCTAA AAGTCGATCT GAAACTTGGG GTGGGAAAGG GGAGGTAGCA 000400 000401 ATTTTTGAAG TATTTTAGCC ATTTTTTTCA TTTAAAGAAA CCACTTGTCC CCATTTCCTC TTCTCCACTT TCTCATAATT 000480 000481 TTGTTTTAAG AGGAACACTG GTTGTTTTTT ATACTTCTCC TAATCTTTAA AAACTGCATA TTGTTAAGAC CCCAGTGTAT 000560 000561 TTAATAGGTA TTTTATAAGC ATAGCCCATT GGCTCATGTT AGTGAAACCA TAATCCTCTT TGCTTAGAAC ATTAAACTCA 000640 000641 TAAGAAGTAC TACAAACCCC ACCACTCTTT ATAGATGTAT TGTACCACTA ATATAAACAG CTAAAAAATG GGGAAATTGT 000720 000721 AATGTTACGC CTGTGCAATT TTTAAGTGGC ATATTATGGC AGATTAAAAT TTAGATACTT GGCTTTTCTT GGGCAAGCCA 000800 000801 CTAAGTTGTG GCGGAATGTT TTCTGGTGTT CTTGGACTGC AATTATGCAC TATTAAAGTA GTGGCCTGCT ACATAACTGC 000880 000881 ATTTAGCCAG CATTTCTGCA GTGCGTAACT GTGAGGAACG TAGTACCGCA AATGGCAATG GACATTAGGA CCCGGATGTA 000960 000961 GTATTCCTGC TTGCTCCAAG ATTCTCATTG CCGACTGCAT ACAGGTAGGT AACAAGCAAT ATAATCTAAC TTGGTGACTT 001040 001041 GTATGTACTT TTATTCCGTG GGCATTCTGG CATCACATTT CTGACAATGA AATTACAGTG CAGCACCTAA CACTTGTATG 001120 001121 GTAAAGCTTT TTTAAAAACA TGGGCTTCAT GAAAACACCA TTGTTACTAA CTTGGGCTTA GATGGGAATC TAATGTGAAT 001200 001201 AGTTCAAGTT ATGGGACTTG TCTAAATGTG TCTATACTCT AAACCTGGGG GAAGGTGGTG TGGAACATTG ACTTGACTAC 001280 001281 AGTCGAATAC ATGTTGGGAA TCATTCCCAA TCATAAGACA TCGTCGTTTC TGTAGGATGA CTGCATATGT TCAGAGTAGC 001360 001361 TTTTTGAATT TGGTTCCCTT AGCTTTAGGG ATGTGATGTT ATAGTCCAAA ATGTTTACAA GAAAACCTAA GTCTTCAAAA 001440 001441 GCACAACTTT TGTTGCTTAG GACTTTGCAT CAACTGTTGT TCCAGACCTC ACTTCAACTT CTTGGTCTCT GAACTGGTTT 001520 001521 TAGCTAGCAT GCATGAGAGA CAGTTTTCAT GTATAATGTT TCTGCTCTGT AACTGGAAAG TGGTTTACTT TGCATAAATG 001600 001601 CTGATGAAAA CTTCATGACT ATGAGACTTT TCTTCTGTGT ATCAAGAAAA AGCTTGCTCG TTGGCAAGCA ATTCACAAGG 001680 001681 TGGGGACAGA CTTGTACTTT AACATGTAGT CCATTCAAGC AAACAACTTT GGACTCTACT GATAGATGAA AGAGCAAATG 001760 001761 ATGACTAGTT TAGCCTCTGC ATATCAACAA TATAATGCAG ATCAAGTATA ATGCTCAATA TTAGTGACAT GAGTATCACT 001840 001841 AAATTACATA GAACCCTGAT GGGGTTTCCT GTGTCGTAAT CCATTAAATC GGTGGCCAGT GCTTGCTGCC GTGGTTTAGT 001920 001921 GATTGGGTGT TAGAAATAAA AACTCAGGTC TATTTCTTAC CAGTCAGTAA CAATTTTTAG AGAATGTACT TGGTATATAA 002000 002001 TATATGGACT TCAGGAACTT TATTGGGGTG GGGGGTTAAT TTTGCCTTAC CCTGTTCACT TTCAGATGAT TAGGCTTTTG 002080 002081 CACTTTAGAA TGAGAAACTT GTGACGTTAG TGTGTTCTTA CTAGCTTTAA TTTGTATGTA GCAATGAATT GTGAATCTTA 002160 002161 GTGCAGTGGG TTTTTTTAAA AAACTCAAAA AGCTGGGAAT TAAGTGGTTT CAGTAATAAT GCTATACCGA GGTGCTTGCA 002240 002241 TTGTATTTCA TAATTTTGTT ACAAACCAAA ATTATTTTTA ATGAGAACAG TCTTGGGTTC AGAGGTGTGA TGCCAGAATG 002320 002321 TATTTTCGTA CTGTTAGGCC CTTGGAACAG ATACCGGTGC TTTCTGAAAG ATGAAAGAAA TGCAATGGGT GCTCTTCATG 002400 002401 CAAGGTTGCA AACCTACCAA GAATGCATAA TAGTCTCACT TTTCCCCAAT AAAGAGATGC GTGTGACTAG TTTTGGACTT 002480 002481 TTAACCTTAA TGGGGGTTGC ATGTCTCCTA TTGTTAATCA TTGTCAGCTG CAGTGACATG ATCCACAGTC CTGCATTTAC 002560 002561 TGCCTTTCAC TTAATGATTT TGGACAGGTT TTAGAGAGCC AGGATGTTGG TCTGGGCCTT TATTTGGTTT TGGCTTTAGC 002640 002641 TGATAATGTT TTAGTGATGT CAGCTAGTGC AGTTCTCAAA TGGCTGCCTA TTAGGGAAAG AATTCAGAGG ATTTGACTGC 002720 002721 TCCTAATCAT CTGTCATTGC TGCTAGATAA TGATTGGCAA TTTTTAAGAC TCAACTGGAA ATCTCAACAG TTGCTGGTAA 002800 002801 ACCATTAACC ATAAAAACGT TGCTTTTGAA CACCAGTGCT GAAAAAAATA TTTTTTTTTT TTTTTTTGAG AGTGAAAAGG 002880 002881 GCTTGGACTT AAGATAGGAC AATGTGGAGA ATGGGGGGAA GAATGCAAAA CGATATAGTA TCCCTTATGG ATGGTACATG 002960 002961 TGCAACAGGG AACTCTTACT TCATATACCC TTTGCAGTAA TCATTCAGGG AGGAAGAAAA ACCTGGAACT TGAATGAAGG 003040 003041 CTGATCTTTG TTTTGTGCAC TGTGGCCCTG CCAGGCATAT AGTGAAGGTG AATGTCTTCT CCCTCAGAAA AAAATTGGTT 003120 003121 CCTTGCTGTC CCAGTAAGGC ATAGCTTTTC CAGCCCTAAC TTTAAAACTC AGTGAGGACT TAGATGGGAA AGAATGAGGT 003200 003201 AAATACAAAG GATTGCAGGA CAACAACTAC AGCGTTGTGT ACTGTGGGAA GGGGAGTTGG GCACTCTTGG AGGACTCCTG 003280 003281 CTGAAGGTGG TCAGCCTGCC TGACAATGGA AGACATACTT GAATGGGGAG CAGGGTATGT GCTTTCATAT GAAAAAAGAG 003360 003361 CTGATGTTAA AACTCATTTG GTGAGGTCAA CGTTGTCACA TACCTTCACA TAAGGGATAG TATATTTTGG GTTGCAGTCA 003440 003441 AACTTGTGCT CAGACTGGTG AAACTGAGAG TCAGGCTTTT ACATTTTAAA GAAAATACAG TTTTCATTCT AATTCAGGTG 003520 003521 TCTACTTATT TTATGTAAGA ATAATTTTAG ATTTCCCCCC CACCATGAAG TTTCTTCCTA TTTTTTTATG CTGTAACTTA 003600 003601 CCCCCAATCT TTATCTCTGG ATTTTTACTC TTTAAATTTT GAAGTTGACT AGCATTTTCA AACCTTTATT TTATACCCTT 003680 003681 GTCTTTTATA TTAACTTTTT CTTATTATTC TTTAGGTAAG AATGATTGAT GTTGGCTGAT ATTGGAGTGC TCATTCACAT 003760 003761 GAAAGGTGGA TAGATACTTC TCAAGACATC ACACAGCGTG AGTCAATCAA GGAGGGAAGC CACAAGCAGA CTGACAACGT 003840 003841 TTCTAGAGCA GGATCAGGTG AGCTGTGTCC AGAAAACCAA CGAGAAGGAG TGGAAGGAGG AATGAACGTT TCATTCTCGT 003920 003921 TAATAAAGGC ATTATCCTAA TTA |
Predicted Small Protein
Name | NONHSAT002344_smProtein_2309:2593 |
Length | 95 |
Molecular weight | 10796.8975 |
Aromaticity | 0.106382978723 |
Instability index | 49.7255319149 |
Isoelectric point | 7.66705322266 |
Runs | 12 |
Runs residual | 0.00115633672525 |
Runs probability | 0.0489607254314 |
Amino acid sequence | MPECIFVLLGPWNRYRCFLKDERNAMGALHARLQTYQECIIVSLFPNKEMRVTSFGLLTL MGVACLLLLIIVSCSDMIHSPAFTAFHLMILDRF |
Secondary structure | LLEEEEEELLLLLHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEELLLLLEEEELHHHHHH HHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHH HHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTT TTTTTTTTTTTTTTTToooooooooooooooooo |