NONHSAT002438
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002438 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1395 nt |
Genomic location |
chr1-:37920480..37940044 |
Exon number |
3 |
Exons |
37920480..37921513,37921968..37922060,37939745..37940044 |
Genome context |
|
Sequence |
000001 GGCCGCTGCG CGCCGGACGG GGCCCAAGCG GGGGTCGGAG CCTCAAGGCT GCGGCGGCGA CGAGCTCCGA GCGGGACACT 000080
000081 GAACGGCCCG TATGCGCAAG ATAAGCACGG ACTGAATCAG GTACACGCAC CTGCCGGGGA CGCACTGACC GAGGTGCGGA 000160 000161 CGGCGGTACC AGGACAGGTA AAGCCGCGAA CACTCGGACC TAAGAACTTG ACAGGTACAC CCTGCCTGAT GAAGCTACGT 000240 000241 ACGGCCAGGT GCGCATCGAG TGAATCAGAG ACGAAGTTTC GCCATGTTGC CCAGGCTGAT CTCAAGCTCT TGGGCTCAAG 000320 000321 CAATCCACCT GCCTTGGCCT CCCGAAGTGC TGGGATTACA GGGTGAGAAC CTACTTCTTC ATAAAGAGAA TTTGGAGGGA 000400 000401 GCTTTTTGTT CTGCGGGGAC AACATCTGGA TTTGAATACA TCCATGCTCA AAAGGAGATT TCTCATAATG GACCCAACTG 000480 000481 AAAGCACTCA GAGTACAAGG ACCGGTGAGC TTTCAAAAGG AGACACTTCG GGAGACTCGC CAGGGGCCCT CGTATCCCCG 000560 000561 GCAGCGCGAG TTTTGGAGGT CAGTGGAGGG CTCTCGCATC ATGCATGTAA CTTTCATACT CAAAAACTTA CCTTCATCCT 000640 000641 GCATCCCTCA CCCCCCTGCA GAAACTTGGG GCTTGAATTC ATTTAAAAAC ATTTGCGGTT TCAGAAGCCT TCTTTTTATT 000720 000721 ATGAAGCTGC CAAGGAGATC TTAGAATGAA AGGCATTTTT AGAGATGAGA AAGAAGGAAG CCAGGCCAAG GCTGGGCCGG 000800 000801 CTCTCAGCCG TGGGTCTGTA AAGGTGACAC GTGGGACATG GCCACCTGCA GACCCTGCAG GCGGCTGGGC AGAGGCACCC 000880 000881 ACAGGGACCT GGGTTTGAAT CCCTGCTCTG CCAGTCATTT CCACAGCGAT CTTGGGGGAA GTTGTGTAAC CTCTGGGCCC 000960 000961 TGCGACGCCC TTTCCTGGAG CCTGGAGCTG GAACGAAGCC CCTTGGAGCC CTGACATCAG AGGTGACGTT AGTCTTCGCA 001040 001041 GGCAATGACT CGGCGGAATG TGATGCCACT CCCTAACCCG TGTCCGGACT GGCAGAGTGT GTGCCGCCTC CCACCAGGTG 001120 001121 GTCTGGCTGC TTTGATGGAT CTCCTAACTT CTCTGCACCC CAGAGCCCTC AGTGCTGGCC AGACCTTCAC TCACTCCTGG 001200 001201 GTGACAACCC CGTTCTCAGA TAGTGGGTCC CACAGGCTGG CCTGTGGCGC CCCCTGCTGG TGACTGCAGG GAGAAGGATG 001280 001281 CCCTAAGCCA AAGGAAGTCC TTCCTGGGGT CTAATCTCTA CCTTTTGCAT GATGAGGCAG CTGAGGTGGC TCGCTTTCTC 001360 001361 CTCCACCCCA GAAAATAAAG TCATATGGAG TCCAA |
Predicted Small Protein
Name | NONHSAT002438_smProtein_443:685 |
Length | 81 |
Molecular weight | 8661.7994 |
Aromaticity | 0.05 |
Instability index | 55.91625 |
Isoelectric point | 7.88592529297 |
Runs | 14 |
Runs residual | 0.0361842105263 |
Runs probability | 0.0380359350948 |
Amino acid sequence | MLKRRFLIMDPTESTQSTRTGELSKGDTSGDSPGALVSPAARVLEVSGGLSHHACNFHTQ KLTFILHPSPPCRNLGLEFI |
Secondary structure | LLLEEEEEELLLLLLLLLLLLEELLLLLLLLLLLLEELHHHEEEEELLLLLLLLLLLLLL EEEEEEELLLLLLLLLLEEL |
PRMN | - |
PiMo | - |