NONHSAT002440
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002440 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2088 nt |
Genomic location |
chr1-:37935041..37937128 |
Exon number |
1 |
Exons |
37935041..37937128 |
Genome context |
|
Sequence |
000001 GGGAGATGAG GTTGGAGAGG GAAAGGTCCC AGGAATGACC TTGGCTTTCA GTTGCTTCAC TGGGCAGCTC AGCCTGGGGA 000080
000081 GGACCCGGGA ACTGGGCTAC CTCTGTAGAA AGGCTGGGCA GGCTGCCCTC AAGCCTTAAG GGAGTGGCTG CTGAGGTGAT 000160 000161 GTTTAAATTC AAcaaggcct cctagaagtg aagaaaggac cagatccctc ccatgtttga gactcctggt atatttcttt 000240 000241 ttatttttta ttttcgagat ggagtctggc tctgtcgccc aggctggagt gcagtggcgc gatctcagct cactgcaagc 000320 000321 tccgcctccc aggttcatgc cattctcctg cctcagcctc ccgagtagct gggactacca gtagctggga ctacaggtgc 000400 000401 ctgccaacac acctggataa tttttttgtg tttttagtag aaacggggtt tcaccgtgtt agccaggatg gtctcgatct 000480 000481 cttgacctcg tgatccgccc gccttggcct cccaaagtgc tgggattaca ggcatgagcc actgctcccg gccagactcc 000560 000561 tggtatattt caaaaagaca tgtcacagca gggctacaaa aatcaatgta tgttttaaac ggtaactgaa caaattaact 000640 000641 cttttttttt taaatcatgc attcaaatgc ggtgcaatat atttggacta ttgacaagat aattggagaa cttgtattaa 000720 000721 aaatacatta tttccttgga gagatggctg attttagggc tgggacaggg aaaggatgag ccggcagtgt gctgtggtgc 000800 000801 cagggattta ggaagcgctc aaaacacaaa aggatgggag tgcgtcaaag ggatccagga gccagaagag ctccctatgg 000880 000881 ccaaagctgg agcaactgag caagggaata aataatagga taatattgaa ttataaccta aagtataaaa taaatattta 000960 000961 tactgatata aataattttt ttgttttcag agccagggtc ttgctctgtc gcccaggctt gagtgcagtg ccgtgatcat 001040 001041 agctcactgt aaccttgaac tcctgggctt aaacgatcct cctgcttcag cctcctgagt agctaggact acagttgtgc 001120 001121 accaccacgc ctggcaaatt aaaaaaattt tttttgtaga gatggggatc tcgctatgtt gcccaagctg gtcttgaact 001200 001201 cctggccgga aatagtcctc caccttggtc ccccaaagtg ctgggattaa aggcatgagc caccataccc agccctgata 001280 001281 taaataaatt gttgaatcaa taacctactg ggggagaaga ggcaagtctt ccttacagaa gaatttccaa taatgaatgc 001360 001361 agattgtttc tcctctagga ggtggagctt aattattcct ttcccttccc tttcctgtac actggactca ggacttgctt 001440 001441 ctaaataata gagtagggaa agagaagaat agtaactata caatggagaa acctgcagac accactttaa ccaagggctc 001520 001521 aaggttaaca tcaccagtga taagtctagt ggctatcatg tagctaaccc tgccccctcc acaccatgct atatgaccag 001600 001601 aaggatactt cacctctgtc atattctttc taaaactcca taaccctgga gaaaaaggtc agacaaaccc aaattaaagg 001680 001681 tcattctgca aaatacctga ctaggactcc tcaaaactgt caaggttgta agaagcacag aaataattaa agcattgtga 001760 001761 aaaagaaaaa atcaaaagca tagaaagaca gcaacagcca cggaccagag gacaccggac atgctgccta gatgcaggat 001840 001841 gccactctag gtcatgtcgt ggagcagaga gagcaggaac agagaggctg gtgaaatcca aataaggtct gcagttatgt 001920 001921 tactaatgat ggaccaatgt gggatttttg agttttgaga aatgtaccag ggtggtgtaa gataacatta ggggaaactg 002000 002001 aaactggagg ttgggtattc tggaactgtc tgtactatct ttgcaactct tctgtaaacc taaagttaat tccaaaattc 002080 002081 agaagtta |
Predicted Small Protein
Name | NONHSAT002440_smProtein_212:367 |
Length | 52 |
Molecular weight | 5739.5831 |
Aromaticity | 0.156862745098 |
Instability index | 63.9041176471 |
Isoelectric point | 6.52911376953 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0485976172251 |
Amino acid sequence | MFETPGIFLFIFYFRDGVWLCRPGWSAVARSQLTASSASQVHAILLPQPPE |
Secondary structure | LLLLLLEEEEEEEELLLEEEELLLHHHHHHHHLLLLLHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |