NONHSAT003122
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT003122 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1761 nt |
Genomic location |
chr1-:48693560..48695233 |
Exon number |
1 |
Exons |
48693560..48695233 |
Genome context |
|
Sequence |
000001 GTGATTGTCA GCTTCCCCTC AGCAACACGC ACATGGTGAT GCACTCAGCA GTTCCCTAAT TAGCATTTCC AGACACAGTG 000080
000081 ACCACATTGC AGTGACACCT ACCGAGATCT TGGTGAAGAT GTAGAGGATG AGAGACAGGA CAGACATGTA CACCTGGATC 000160 000161 CTCTGGCCCC CAAATCGCTT CTTCAGATAC TGCGGCATTG TGACCACACC TGCTGCGATG TACACAGGGA CGAAGACCCA 000240 000241 GCCAAGGGCC AGGAGCAGCC AGGTTGCCTG GGAGAGTGGG GAGAAGAAGA AGGTATCCAG GTCCTGGATG TAGACAGAGG 000320 000321 GGCGGCTTCC CACCCAGAGG CAGTGCTGTG CTGTGGGAGG CCCCCGAACA GAGAAATAAG AGACCTGGGA CCTGACCCCA 000400 000401 GTCCTCCCGT GTGACCTTGG ATGGATCCCT CTGTCTCCTC CAGACCTTGA TTTCCTCATC TGTGAAATGG ATTCTCAATT 000480 000481 GTGAAATGGA TTCTCGATTC ACCATGTAGC CTCCCAGGCA TCTCTAAGGA TCCTCCCAGC ACTAATGCCA GAGACAGAGG 000560 000561 TGGGTTAGAC CCTCAGTATT CTGGAGAAAC CAGGCCAGCT TCCTTACGTT CCACTCGAAG CCACCTACGG CAAGGCCTCC 000640 000641 GGCAGCCCCT GTCCCAGCCA GGCCGATGAA CAAGCCACTG CCCACATTGC TGGACATCAG AGATGCTCCA ATCTGCAAGG 000720 000721 CACAGTTGGG TCAAGGGTCA GGAGTCAGGA GTGATCTGAA TGAATCTGGA GCGAGGACCA TGAGTAGTGA GGAGCTGATA 000800 000801 TTTGTTGGGT ACCCACTGTA TGCCAGGCAC TGCATTCATA AATACATTTA ATTCCACAGA TATCCGCAGG GAGGGGTATT 000880 000881 AGTCATCCCA GGTTACAGAG GAAGGAACTA ATGTAAGGAA AGATGAATTC ATGGCTCCAG GTCACCCAGT GAGTAAATGG 000960 000961 TGAAGTGGGA AAAAAGGGAA AGTGGGAAGG AAGCCTGGAA GTGGGGAGTG TGGACCTCCG CCCTGAGGCC ATGGGTCTGA 001040 001041 GGGCCTCCAA AGGAAGGAAG CTGAAGGGGA TAGGGAAGCC CCACAGGAGG GAAGGAAAGG CCCTCCCACC ACCCCAGGGA 001120 001121 TAGCCAGGCA GAGGGAGGAG CCGAGGGACT GAGCACAGGC CAGGTCGACC TCTGAGTTAG TTCTCCAGGG GCGCAGCCAA 001200 001201 GCACTTGGAG GCAGTAGAGA GCAATGATGA TGGTGAGCAT GATCAGGGCA GTCAGGGCCT GTGCAGCATC TCCAGGAACC 001280 001281 AGCTGGCCTT CTGAGTTTGG GGACTCATTT AATCCTCGCC ACAACCCTCA GTGCTACTTT TATCCCCATC TTACCCATGA 001360 001361 GTGAACTGAG GCACAGATAG GTAACTTGCC CAAGTCTCAG AACTAGTAAG TGACCAAATG AGAATTCAAT CCCTGGCTGT 001440 001441 CTGGCTCCAG TAACACTACA CAAATGGTGC TTGCCACTTA ATGAGCACTT GGTCAATATT CTCTCTTATT ATTAGATGGG 001520 001521 ATCTCTGACT GGGAGGGGAG AAGGGGGAGA GGAAGGGGCT CTGGAGCCTG GGAGGAGGCT TAAGGAGACC TCGGGGAGAG 001600 001601 GGCTGGGGGC AGCTAGGGGC AGAGCCGTGT TCCTTTTTGT ATACTATGTC ACCACAGTAA AATCACTTCC TCTAAAAAAA 001680 001681 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 001760 001761 A |
Predicted Small Protein
Name | NONHSAT003122_smProtein_665:850 |
Length | 62 |
Molecular weight | 6775.769 |
Aromaticity | 0.0655737704918 |
Instability index | 58.8114754098 |
Isoelectric point | 7.81744384766 |
Runs | 9 |
Runs residual | 0.00527605049934 |
Runs probability | 0.040167618599 |
Amino acid sequence | MNKPLPTLLDIRDAPICKAQLGQGSGVRSDLNESGARTMSSEELIFVGYPLYARHCIHKY I |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLLLLLEEELLLEEEEEELLLLHHHHHHLL L |
PRMN | - |
PiMo | - |