NONHSAT003218
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003218 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3864 nt |
Genomic location |
chr1-:52322198..52326061 |
Exon number |
1 |
Exons |
52322198..52326061 |
Genome context |
|
Sequence |
000001 TAAACTGTCT CCAGATAAGA AAGTTCTAGA GCAACTATCC TATATTTTTG AAGAAAAAAC AATTCTATCT GGGGAAGTTT 000080
000081 TATTCTTCAG AAAGAAAAAC TTACGGAATG GGAAAATCAA CCCTATCTAA ATCAACCCTG ACTAGTCAAC CCAAGTCAAC 000160 000161 TCTGAGTATC TCTGAGGTGA AAGATGAAGC ATGCTGATGG GTGTCAAATC CAATCTTGTA TGAATAAAAT AAGCATCGGG 000240 000241 GAAGCATAGA TGTCATCTTC TAAGGCAAAC ATTCTGAGGA TCTGGCAGCA TAAATCCATC AGTTAATTTA TAATATAATT 000320 000321 GGACACCACT ATGGCCAAAG TAAAAGACAC GGCCAAATCT GGATCACCTT ACAATTTTCA AGATGCTTTC AAGATCCCCC 000400 000401 TTGTCCTGTT ATGGCTGAGG GAAGCAGTGA TGGGAGTAGG CACCATAGTC TGTAACCCCT CCCCTTCTGT CTCGGTACAG 000480 000481 ACAAAGCAGA TAAGCTGGGG CTCTGGTAAT CTTACACAGT TTACTTCATG CCAATTTTTA TGCTCCATGA GATCCAGGTA 000560 000561 AACTGAGAAT GCTGTGCATC TCCTACATCT AACTACATCA TTTCTAAATA CTTAGAAATA TTTTAAGTTT TAATACTTAG 000640 000641 AAGTATTTTA AGTTACCGTA AAGACTTTGA AACTGTGACA CAGGTACCCT CCCCTCTGAT GTTTTTCCTA GTCATCCTGG 000720 000721 GTCTCAGGTA GCCACATGGC ACCCAAGATG GGTATGAAGG GCAGGTCCTG TCTGAGTCCT GAATTTACGC ACAGCTGTAG 000800 000801 ACCTCATGAC AGAAGACAGA AATGGGAAGA CATTGCCTGG AGGACGGAAC CCTCCCAAAA TAGCCAGGAG GCAAAGCTAG 000880 000881 GGCAGGGGAA AAGGGGATAT ATTGGGCTTG ATTCTGCCTT GCAGCTGGTG GCCTAGGCAT TGAGAATGTG TCCTCATGCC 000960 000961 TCACTGTGGG CATACATCCA GACCTCTGAC TCCAGAGGCT CAAAACCAAA AACAAGCAAG CAAGTATCAA ATTATATTTA 001040 001041 ACTGATAATT TTGAAGCCAT TTCTATTTTA GTAACAATTT ACAACTACCT TTATTTACTA AATATTACAT ACAAGTAACA 001120 001121 CATATAGACA CAGACACAAA GACAGAAGCA GATATTATAG CTTACATAAA GGATTGTCAT TTGCTGGCTT TTGAATAGTT 001200 001201 TTTCTTTTCC CCATTCAGAC TATCATTCTT CCATTACCTG TTTCATTGCC CTAAGGAGTT GTTAGCTAGG CAACCTTAAA 001280 001281 TTTGCATTTC TAATGGGACA ACTCTTAGGT GAAATAAGGT AGAAAATTTA TATCTCAAAA GCACAACCTA AGACTTTAGG 001360 001361 CGTACATATT GTACCCTCAT TTGCTCAAAC CAAGGAAAAA ATGATGTGAG TAAAAAATTT CAGTTAAGAT GTCCAGAAAA 001440 001441 GCACCTTAAA CAAAGGTTTG ACTTGTTACA TAAATTTAAA ACTATGGTAA AAGTTTCTAA TATACACAGG CAGACACCCT 001520 001521 TACAAATGGA GATTTCCTTT ATAGATGTAA ATTTCTTTTA CAGAAGAGTT TCAGGATAGC CAGTTAAATG CCAGGAAGGT 001600 001601 ATATTTTAGT TGGGTAGGTG GTTTATTTGA CTTAGCTACT GTTTCTTGGC TAAAATTACT GAGTTCAGGG TAGATGGAGC 001680 001681 CCATTGAGGA ATAGGGCAAA GAAAACAGTA CTCTGTGCTT GGACTCAGAC TGGATAGATC TAAAAAAGAA GCAAGTCTGC 001760 001761 TTTACCCACT GGTTTACATT TTATCAACAT TTTATCCAGG ATATCGTTAT TTTCACTCTT GAGGCAGGAT AGTATTTATG 001840 001841 CCAAAAGTTT AGCAGATTTA ATTATTCTTG TGAATTATTC ACCTGAGCTT TTTATTTGCC TTTTTTTTTT TTTTTTTTAA 001920 001921 AGACAGGGTT TCCCTCTGTG TAATCACAAA GGCACAGTCA CAGCTGATTT GCAGCCTTTA CCTCCTGGGC TCAAGTGAAT 002000 002001 TTCCCACCTC AGCCTCCTGA GTAGCTGGAA CTACAGGTGT ACACCACCAC ATCCAGCTGA TTTTTAATTT TTTGTAGAGA 002080 002081 GGAGATCTCA CTATGTTGCA TAGGCTTGTC TTGAACTGCT GTGCTCAAGC GATCTTCCTG CTTTGATCTC CCAACGTGTT 002160 002161 GGGATTACAG GCATGAGCCA CCACACCTGG CCCTATTTGC CTTTTATGAA GTCTTTTAAT AAAGCAATAA AAATATTGAA 002240 002241 ATGTTTTTAG AAGCTTCTGC ACATCAATAG GCATCCTTGA AGACTAATTG AGGACCCCTC ATTTTTAAGT GCTGTGTTGT 002320 002321 TCATTAGGAA CGGTCCATTG TAATTTTAAG TTACAAAGAT TTTGCCATTT CTGTAAGTAG TTATTTCTTC TGAGGCCTAA 002400 002401 TATTTATACA TTCTACCTTA TAGCTAGAAG GTAGAATACG GTGTTCTTCA GATACTAAGG ATCCAATATT TCCCTAGAAT 002480 002481 CCTGGATTTG GTCCTCAGAT CCCCTTCATC AATTTAGTTA ATGATTTTTC CCTACCTAAG GGTACAAGAA AAAGAATGTA 002560 002561 GAACACAAAA ATCTCTGCAA ATTTCTGAAG TCTGCACCCA CTGTAATATT ACCATTTCTG CTAGTTTCTG CCTGATCCTG 002640 002641 GACATCTGCA GCCTCTTAAC TGAATCCAAG TCAGTTAATT ATCAGATCCA ATCCAATCAT GGATCCAGTC CAGTTTCTGT 002720 002721 TGTGACTTCC AAACCCAGTT CGGATCAGAA GTTTGCTCAA ACTCGGTTCC AAACAGAAAT CTGTCGAGCT TCAGAATCTC 002800 002801 AGCGAGAACT TACCACGATA TCAGTTGCTT CCAGAAAGCA ATGGACATCG TGAGTCTGAG GGGTACCTTG CTTGGTCACT 002880 002881 CCATGCTCCT GGGCATGACA TCTGTTGAAA ACCTTAGACA TATTAAATTT AACAGAGTTT AACTGAGCAA AGAATGATTC 002960 002961 ACAAATTGGG TAGCCCAGGA ACCAGAATAG GTTCAGAGAG GCTCTGGTGC AGTCCCATGA TTGAAGATTT ATGGACACAA 003040 003041 AAAGGAAAGT GATGTACAGA AAACAGAGAT GAGGTACAGA AACAGCCAGA TTTGTTACAG TTCGGGCATT TGGAGTATTT 003120 003121 GAACATAGTT TGAACAGTTG GCTGCCTTTG ATTGACTGAA ACTCGGTAAT TAGCACAAAA GTAGGTTACG ATCTGTTTAT 003200 003201 ACATCTAGTT AAGTTTCAGT TCACTGTGTA CAGAGAAACC TTTAGGCCAA ACTTAAAATA TGTAAGGAGG TGGCTTTAGG 003280 003281 TTAGACTTAA TTTAACAGAT GTTATATATA TTGGTTTTCA TCCACTGTTC CTGTCTTGTA ACTCCCATAG CCCTTGTTAA 003360 003361 AGTCTTTTTG TTACAATGTT GGGTGTGTCA GGTCTCATGT GTCTAGACTT AATTTAACAA ATGTTACATA TATTGGTTTT 003440 003441 CATCCATTGT TCCTGGCTTG TAACTCCCAT AGCCCTTGTT AAAGTCTTTT TGTTACAATG TTGGGTGTGT CAGGTCTCAT 003520 003521 GGGCAGGCCT CAGGAAACAG AATTTCTCAG GCTTTCTCCT ATCCATCTCT CATCTGCCCC AAGACAAGAC CCTATAATCT 003600 003601 TCCCTGCCTT TCTGATTGGG AGTTATAAGA CCCTCCTCAG AGGGCGTCCC ACCCTATCCT TGGAGGAAGG AATGCTGATA 003680 003681 TTTTGAAATT TCCATAAAAA CCCAGGAGGA CTAGGTTCCA GAAGCTTCAG GATGGCTCAA CACGTGGAGG TTCTTGGAGG 003760 003761 GTGGCCTGCA CAGGAAGGGC ATAGAAGCCC TGTGCCCCTT CCCCCATACC TCACTCTGTG CATCTCTTTA TCTGTAATAT 003840 003841 CCTTTACAAT AAACCAGTAA ATGT |
Predicted Small Protein
Name | NONHSAT003218_smProtein_3497:3685 |
Length | 63 |
Molecular weight | 6900.0965 |
Aromaticity | 0.0806451612903 |
Instability index | 61.9725806452 |
Isoelectric point | 8.36285400391 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.0173194584959 |
Amino acid sequence | MLGVSGLMGRPQETEFLRLSPIHLSSAPRQDPIIFPAFLIGSYKTLLRGRPTLSLEEGML IF |
Secondary structure | LLLLLLLLLLLLLLLEELLLLLLLLLLLLLLLEEELHHHHLHHHHHHLLLLLLLLLLLLE EL |
PRMN | - |
PiMo | - |