NONHSAT003252

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT003252

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1992 nt

Genomic location

chr1+:53099066..53135355

Exon number

6

Exons

53099066..53099347,53105647..53105739,53108535..53108674,53125073..53125252,53133071..53133251,53134240..53135355

Genome context

Sequence
000001 CTCAGGCTCA GCTCCGTCTC GCTCGGTCCC TCGCTTCCCC GCCGGGCTCT AGCCGGCCGT CTGGTGGCCC GAGGTGGCGG 000080
000081 CGGGCTGGGC GCGGGGCGCG ATGAGCGGCG CCTGCACGAG CTACGTGAGC GCAGAGCAGG AGGTGGTGCG CGGCTTCAGC 000160
000161 Tgcccgcggc cggggggcga ggcggccgcT GTCTTCTGCT GCGGCTTCCG CGACCACAAG TACTGCTGCG ACGACCCGCA 000240
000241 CAGCTTCTTC CCCTACGAGC ACAGCTACAT GTGGTGGCTC AGaaatgggg tttcaccatg ttgcccaggc tggtcttgaa 000320
000321 ttcctggact caagtgatcg gcccaccttg tcatcccaaa gtgctgagat tacagCATTG GCGCTCTCAT AGGCCTGTCC 000400
000401 GTAGCAGCAG TGGTTCTTCT CGCCTTCATT GTTACCGCCT GTGTGCTCTG CTACCTGTTC ATCAGCTCTA AGCCCCACAC 000480
000481 AAAGTTGGAC CTGGGCTTGA GCTTACAGAC AGCAGgacct gtgcaggttg ccacaaacaa gaggaatcag acagttctca 000560
000561 ccctcaaggg gctcacatgg aggacaaggc aggcacacaa atggccagga ggcccagtgg tggcccttca tggggcttta 000640
000641 gggaggaaga aatgatgtct gagctgaatc atcaaagatg actcaaagtt tccagGTGGT TCCTAACTTC CTGGCAACAA 000720
000721 CCACAATTGT AATTCGTTCA AAGAGATTGA CTGCTGTGGA GACAGATcat caccatcacc atcaccatca ccatcaccac 000800
000801 caccaccatc atcatcattg tcatcgtcat caTTATGTTG CTTttagctc actggagcct cacagaaccc tgtgagggca 000880
000881 tggacagatc ttcctcaGAG GAGGCCTCAG CAAGTGTCAG CCACACGAAT GAGTGTATGG AGCAAAGGAG GAGTGAACGT 000960
000961 CTAGGAGACC AGCCGTTACC CCAACTCCTC CCCATCCGCT CCTACTCTGG ACTCCAATCT ATGCCCTACC CCAGCTCTTG 001040
001041 GATTTGGCCT TTGGATCAGG TTCTTCTGGT AATGAAGCCT CACCTTTCCC CCAACTAACT CTGATCTGGC CTACCCTGCT 001120
001121 CCTGACTAAC CTCAAGGATC CTGAGTCTCC TTCAGCCTAA CAGCTCCAGA AGCTGAACTC CAGCCCTAAG AGCCCCAGCT 001200
001201 GCAGACAGGC CTCTGGCCAA GAGCTTAGTC AGGCTACCCT GACTAAGCCA CAGGGTTGGC ATGCCCTCTG GGCAGCCCCT 001280
001281 GAACCGGGCT CTGAAAACAC AGGAATGGAC AAGGTAATCT ACCCGAGTCC TGAGCCTGCA AGGTAGTTGA GACAGATCTT 001360
001361 GAAGGAGAGT GGGCACAGTC AGAAAGGAAA AAGTGGCTCA GTGTAAAATA AAACTGACAC AAGCCCATGT ACCAGCAGCC 001440
001441 AATTGGATCt tttttttttt tttttttttg agatggggct tctcttattg cccaggctgg tcttgaactt ctgagctcaa 001520
001521 gcgatcctcc caccttggcc taccaaagtg ctgggattac aggcgtgaac caccAATTGG ATCTTTACTG GACCCCTACA 001600
001601 GGGCACTGAG CTAGGGAATG TTGGAGATTC AGAGGCTGAA TCAGATAGCA GCCCAACCCT GAGATACAAC TGAGCTACAG 001680
001681 GCAAGAGGAT ACTAccgggc gcagtggctc acacctgtaa tcccagcact ttgggaggcc gaggcgggtg gatcatgtga 001760
001761 ggccaggagt tcgagaatac cctggccaac atggtgaaac cccatctcta ttaaaaatac aaaaattagc tggggttggt 001840
001841 ggcacatgcc tgtaaaccta gctacttgag aggctgagac acgagaatca cttgaacctg ggaggtggag gttgcagtga 001920
001921 gctgtgatca cgccactgca ccccagcctg ggtgacagag cgagactctg tctcaaaaaa aaaaaaaaaa aa
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Predicted Small Protein

Name NONHSAT003252_smProtein_677:874
Length 66
Molecular weight 7871.6668
Aromaticity 0.0615384615385
Instability index 45.6276923077
Isoelectric point 9.30682373047
Runs 11
Runs residual 0.0189423076923
Runs probability 0.048867048867
Amino acid sequence MTQSFQVVPNFLATTTIVIRSKRLTAVETDHHHHHHHHHHHHHHHHHCHRHHYVAFSSLE
PHRTL
Secondary structure LLLLEEEELLLLEEEEEEEELLEEEEEELLLLLLHHHLLLLLLLLLLLLLLEEEEELLLL
LLLLL
PRMN -
PiMo -