NONHSAT004573
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004573 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1807 nt |
Genomic location |
chr1-:94614544..94620385 |
Exon number |
2 |
Exons |
94614544..94616071,94620107..94620385 |
Genome context |
|
Sequence |
000001 ACCATTTTTT TCCGAGAATG AATAGCAGAA TTTCCCTGTA TAAAAAGTCC AAGAATAGAA GCCAATTTTA AATTAAAGCT 000080
000081 AAAATAGTAT GACTTTTATT ATTCTGAAAA TGTTGTCATT CCCCATTTCC AAAATAATAC AATGAATAAT CAGAAGAGCT 000160 000161 GTATCCATGT TTTTCTTTTA GGAGACTTTA ATACAAAATT ACCGTGTACT TCATCTACAA TATGTCTTCT GCTGCTGATC 000240 000241 TAGATctgag ctgtccgata cagctgccag aagccacagG TGACGTTATA TTCCTATTCG AAGACCAAGA GCTCAAAACA 000320 000321 TCATTCCTCC CCCAAATGAA AAAATGTCTG GGAAAAATTA CTAATCTACT TCTCTGAAAC CCATTTGGGA AGCTGGCCCA 000400 000401 ATTCGAGTTC TATACTCAAA AGGCAAACGT AAAGACTAAA CCTGTAAGTG TGCCTGTATG TAGATGACTT CTTACAAGAC 000480 000481 CTCCTAATGA GAGTAATGGC AGAAATAGGG GAAATGAAAA TTAAGACAAG TTTTGCAAGT GTTATTCCAA AGAATCCAGA 000560 000561 Atatttccat tttgcccatg gtgaaactat ccaaggaagg ttaagtaatt tggattggtc aggatgtgaa cctaggccag 000640 000641 tctgactttt aagcctgtga tttttctgtt atcccatgAC ATGGTGTACA CTACAAGAAA TGCTAATCTT aataacatag 000720 000721 ctacctgtat tgagagctca ttaggtccgg tactgttcta agcactttgc ttctatctct cactcaGCAT ATTTTAGTGA 000800 000801 GCTCTTTATT GATTTACAAG ATTATGCATC TATGAACTCA GTCACACTGG CTATTAATTA AATTCCCTTC AAGTTTGTAA 000880 000881 AAAATTAATT GACATTTCAT TCTTTTTTCA GAAGACACCA GGTTTTTAGC CTTGGATCAA GATGTCTCAA AAAAAATTCA 000960 000961 GTAAAAATCT AGATCTTGCT CAGCTCCAAA TTCTTGTACT GCTTTCAGAG TACTGAGATC ATTGTAGCCC AAACATGCAA 001040 001041 TGGCATTTTA TAAGCCTCTT GAACTCtgag gactaagctc tgattttttt taatcttgtc caaattccta tctaaggggt 001120 001121 ctggggagtc atgcactaca aaccataaat tctcatcaga tgggttttat ttaaccctat atatcatgac ttacttgcca 001200 001201 acctgactct ggcataacat tatcagacaa ggaagaaaat caaaatattt taccccaaaa catgtttatt tgccatatct 001280 001281 tgaaatggcc ctgcaaagct gtcttttgtg ggggaaaatt tgcctctgta aagaatctct attaacataa ctagatcttt 001360 001361 ttcttccagg ccctcccaaa cctaaggaga ttaactaaaa gtctagcact tcttaaagat ctgaatagga aacatttcaa 001440 001441 ctattatctc taagggcagc cactataaga cttcaaaaga accttggtct ccacaatctt ttatcttaac ctgaaccttt 001520 001521 cccttctatc aatcccaggt ctttagacaa actcaaccaa ttgtcaatca gaaaatattt aaattcacct gtagcctgga 001600 001601 agcccctgct ttgagttgtc ccatccttct agaccaaacg aatgtatttc ttaaatgtat ttgattgatg tctcatacct 001680 001681 ccctaaaatg tataaaacca agctgcatcc ccaactacct tgggcacatg ttctaaggac ctcctgaggg ctgtgtcatg 001760 001761 ggccatggtc actcatattt ggctcaaaat aaatctcttt gaatatt |
Predicted Small Protein
Name | NONHSAT004573_smProtein_221:376 |
Length | 52 |
Molecular weight | 5627.5681 |
Aromaticity | 0.0588235294118 |
Instability index | 47.1607843137 |
Isoelectric point | 4.38543701172 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.014194867136 |
Amino acid sequence | MSSAADLDLSCPIQLPEATGDVIFLFEDQELKTSFLPQMKKCLGKITNLLL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLEEEEEELLHHHHLLHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |