NONHSAT004681
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004681 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
799 nt |
Genomic location |
chr1+:96230212..96261010 |
Exon number |
5 |
Exons |
96230212..96230266,96230547..96230653,96234265..96234338,96244337..96244565,96260677..96261010 |
Genome context |
|
Sequence |
000001 CCTGTCTTTA CTGAAAATAC AAAAATTAGC CAGGCATGGT GGCAAACACC TGTAAAAGAA CAAATCAGCT TTTTTACCCT 000080
000081 AACATCTATA TGTGATCCAT TGTTAATATT TTAATGTTTC CTTTCATACA CACAATACAT ACACACATAT ATATGTATAT 000160 000161 TACATATGTA GTGCTGAGCT CACTACAGTT GTACACAGCA GCCAAGGAGC ATTTTTCAAG GTTAAACAAT TCAACTACTT 000240 000241 AGGACGTTTG TCTAGGGAGA TGTTGATGTG TGGATGAGTT TAATCTTATT AATGCTCCAC ATGGGTATTC TAAGGCTGAG 000320 000321 TCAAGGCATT TTTCTAACAT AACATGACAG CATTAAATGA TCCATTTCTA GTGTGTTTTT ATTCCACACC ACACATTTGT 000400 000401 AGACCTAGGA CTACAAACAT TATCTATGTC ATTATAATCA CATTTTTTGG TCCTTTCTAA CTCATCTATA ACGGAATACT 000480 000481 ACAGACTGGG TCATTTATAA AAAACAAACG TTTATGTGGC TCACAGTTCT GGAGGCTGGG AAGTCCAAGG GCATGGCACT 000560 000561 GGCATCCAGC AAGGGTCATC CCATGGCAGA AGTATGGAAG GCAGAAGTAA GTCCATGAGT CAGAGAGAAA CATTGATCTG 000640 000641 AACTAATCCT TTTTATCAAG AACACACTCC TTCAATAACT AACCTATTCC TGTGATAACA GCAGTAATCT CTTCAAGAGG 000720 000721 GTAGAGCCCT CATGGCCTAA TCACCTCTTA AATGCCCCAC CTCTTAATAC TGTTACAATG ACAATTAAAT TTCAGCATG |
Predicted Small Protein
Name | NONHSAT004681_smProtein_113:241 |
Length | 43 |
Molecular weight | 4990.7115 |
Aromaticity | 0.166666666667 |
Instability index | 58.4285714286 |
Isoelectric point | 8.21478271484 |
Runs | 4 |
Runs residual | 0.0809222423146 |
Runs probability | 0.0336292174529 |
Amino acid sequence | MFPFIHTIHTHIYMYITYVVLSSLQLYTAAKEHFSRLNNSTT |
Secondary structure | LLLEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHLLLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |