NONHSAT005107
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005107 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2607 nt |
Genomic location |
chr1-:110828997..110881793 |
Exon number |
4 |
Exons |
110828997..110831193,110835009..110835129,110861387..110861504,110881619..110881793 |
Genome context |
|
Sequence |
000001 GGACAAAAAG TCTGCCCTGT AACGGTACTT CTTGCTCAGT GACAGCAGCA ACCCACCTCC TTATCCCTTT CATTGGCTTA 000080
000081 TAAACCCGTC CTTTAAACCA CTATTTGGGA GGTCGGGCCA TCAGTTTCGG CGTTTTTTCC AGAGAGGCAG GCTCACAGCG 000160 000161 ATATCGCGAG AGACGGGAAT TGCTCTGTCA CGCAAGCTGG AGTGCAGTGG TGCCATCTCG GCTCACTGTG ACCTCTGCCT 000240 000241 CCTGGGCTCA AGCCATCCTC CCACCTCAGC CCTTCAAGTA GCTGGGATTA CAGGTCACCA TCCTCTCACT CGCCTCTGAC 000320 000321 TTTTCGCACA GGAGAGAGCT GGTCGAATAG TACAATTCCC CGATGTGAAT GGGGAGAAGC TGGGGAAAGG AAGAATGATC 000400 000401 TTCAGGCAGT AAGGGCCCCT ACTCCAGTAT GATTGGTGTC CTTATAAAAA GGAGAAATTG GACACAGACA CCCTACCAAG 000480 000481 AAGAACACTA TGTGAAGATG AAGGCAGAGA TCAGGGTGAT GCCTCTACTT GCTGAGAAAC TCCTACAGTT GCCAGCCCAC 000560 000561 CACTAGAAGC AAAGGAAGAA GCACAGCCCT CAGAAGGAAC CAACCCTGCT AATGCCTTGG TCTTGGACTT GCAGCCTCCA 000640 000641 GAACAGCGAG CCAATACATT CCTGTGGTTT AAGCCACTGA CTGTGGCACT TTATTACAGC AGCACTAGGA AACTCATACA 000720 000721 GGAGGTGACA GTGCTCAGAT GAAACAGGAC CTTCCACTTC CATGGCAAAG CCCTCATCTT TCGTGCCCAT GCGCCATTTG 000800 000801 ATCTGCACAC AAATCACTGA GCAGGTTCCT CAGCTATTAT TATCCCCACC TTTCAGATGG AAAGAACTGA AGCTCAAGAG 000880 000881 GGCCAAAGAA ATTTGGCTAT GGCTTTCTTT ATTTTCTTTT TCATGGGCAG AAGTAGATTT CAGTTTTGGT CCCTTTCCAC 000960 000961 TACCATATCA GGTTGCCTTA AGGCAACTTT GAAAAGTCTA AAATATTAAA CAGTTTGTGA AGTTATTATC ATTATTCATA 001040 001041 AAGGACAGCG CGAGGTTAGT CTTACCCTAG AGAGCCCCAT TGTTGGCCCA AAGCATCTTG CCAGGAGCCC TATAGGACCA 001120 001121 TGTTTTCAAG GCCCCCAAAG AGCACAGGGC TATTGGTCCA TCCCAGCTCC TGGAATGGCT CATTGTACCC ACCCTGCCTC 001200 001201 CAGCTGAGGA GCCAGGGAGA AGCACTGACC CCTGATCTTG CTATCCCTTC CATTACACTC TTGCCAGAGG AGCTTTTTTC 001280 001281 AGGGGTGGCC GCTTCCCTCT CCTCAAGAGA ATTCTGGGGA CCAACCAGCT CAGGCCTGCT GTTGGCCTCA GGGTCACATC 001360 001361 TCACCCAGAC ACCCCCACCA TTCCCTCAGG TCTAGGGATG CTGCTCCCCT ACCATGGGAT CTTCTTTTTA TTTTTATTTA 001440 001441 TTTATATTTT CCTTATGCCT AGTGTAAAGG GATTTCTTTT CTTTTTTGTT TTTGTTTTTT TTTTGAGATG GAGTCTTGCT 001520 001521 CTGTCACCCA GGCTGGAGTG CAGTGCAGTG GCGCTATCTC GGCTCACTGC AACCTCCACC TCCTGGGTTC AAGTGATTCT 001600 001601 CCTGCCTCAG CCTCCCAGGA GCTGGGATTA CAGGTGTGCC ACCACATTTG GCTAATTTTT TTACTTTTAG TAGAGATGGG 001680 001681 GTTTCACCAT GTTGGCCAGG CTAGTCTCGA TCTCCTGACC TCAGGTGATC CACCCGCCTC AGCCTCCCAG AATGCTGGGA 001760 001761 TTACAGGCAT GAGCCACCGC TCCCAGCCAG GATCTTCTTT TTAAAGCTAT CACCACCCAC TCTCATTCCC CAGGACTCTC 001840 001841 CTCACCCCTC CGGCTGCAAA GGCAGCTGGT GTCCCTACTG GCTCCTTCCT TTCTGCCCCT AAAGACAGGC ACACAGGTGA 001920 001921 TTTTCCTTTT AAGTGTTTTT CTGTGGATTA CTGCGGGGAA ATTGACAGGG GCTACAGGGG CTGATAAAAG GAATAATCTT 002000 002001 TGATATTCTT TCAGTTGGGT CGCTGATTTT CTTGCTGGGC TGACAAGAGC AATCTTCCCT ACTTGGAATC TTGGTTTTAT 002080 002081 TCCTTAGCAT GGGCCTTATC AAACCTACTT TTTAATGAAG GGAGAATGAA GAAGCCATTG AAGCAGACCT CTAGCTGCCA 002160 002161 GTCAGGTCTG CTCTGAAGGC TGCCTATCTG CGGGGACATG TGACTTCTGG GGCTTTCCAG ATTAAGTAAT GCTCACCCCA 002240 002241 CATGTCTGAA ATTCTCCAAA CACTATTCCG GCCCTGCTGT GATTCTTAGA GCAGAGGTTC TTTGCCTTTT TAGTGTAATG 002320 002321 GATCCCTCAG CAACTTGGTG AGCCCTTCTC AGAATAAAGT TTCTAATGCA GAAAGTAAAA CACATGGGAT AATAAGGGAA 002400 002401 GTCATGTCCT TTGAAATCCT TATCAAAAAT ATTTTTCAAA TTTTGTGATA TAATAAGTTT GGTTGCTATT ATATAGCATA 002480 002481 ATATAACTTC ATATCTAATA GCTATTGTTA TTTTGAAGTA GTGGTGAATA TATATGCTAT TTTGAGATGT CTAAAACAAC 002560 002561 TGTAATGTGT TACAAAAATA TCCATGATTT CTATCGGTGA CAAAGTC |
Predicted Small Protein
Name | NONHSAT005107_smProtein_1397:1654 |
Length | 86 |
Molecular weight | 9937.797 |
Aromaticity | 0.223529411765 |
Instability index | 51.3894117647 |
Isoelectric point | 9.69073486328 |
Runs | 11 |
Runs residual | 0.00713012477718 |
Runs probability | 0.0510510510511 |
Amino acid sequence | MLLPYHGIFFLFLFIYIFLMPSVKGFLFFFVFVFFLRWSLALSPRLECSAVALSRLTATS TSWVQVILLPQPPRSWDYRCATTFG |
Secondary structure | LLLLLHHHHHHHHHHHHEELLLLLLLLEEEEHHHHHHHHHHLLLLLLLLHHHHHHHHLLL LLLEEEEEELLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiii |