NONHSAT007576

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT007576

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1815 nt

Genomic location

chr1-:171653555..171697124

Exon number

2

Exons

171653555..171654384,171696140..171697124

Genome context

Sequence
000001 AAATAATGAA CCATCTGTCG CCCTGCAAGT TTCCTCATAA CCCTTGATAA TCCATTGCTC TCCCAGTCCC TAGGCAACCA 000080
000081 GTGCTCTGCT TTCTGTCACT GTAGTTTGTA TTTCTAAAAT TTTTTATAAA TGAAATCATG CAGTATGCCC CCTTTTTAAA 000160
000161 ACCTGGCTTT ATTCAGCATG GTTTTTGAGA TTCATCCATG TGTTAATAGT TGGGTTTTTT AATTTTCTGA GTAGTATTCC 000240
000241 ATTGTATGAT GCTGCAGTTC GTTTATGCAT TCACTTATGT GTGGATTTTT GGGTTGTTTC TACTTTTTGG CTTTTACATA 000320
000321 TAAAGCTGTT ATAAACATTT GTGTGCAGGT TTTTGTGTGG ATATATGCTA TTATTTCTCT TGGAAATAAA AATACCTAGG 000400
000401 AGTAGAATGG TTGGTGTAAG TTTACAATTG TTTTCCAAAG TGGTTGCACC ATTTTATATT GTCACCAGCA TTGTATGAGA 000480
000481 ATTCCAGTTG CTCCATATCC TCGTCATTAC ATATGGTCAG TCTTTTTCAG CCTCTTTCAT TCTAGCCATT CTAGTGGATG 000560
000561 TGTAGTGGTA TCTTGTTGTG GTTTTAATTT GCATTTCCTT AATGACATAT GATGTTGAAC ATCTAGTAGT GTGCTTATTT 000640
000641 TTCGTCCTCT TACCTTCTTT GGTGAAGTAT GTGTTCAAAT CTTGCCCATT TTAAAATTTT TCTCATTGAG TTGTGTTTTT 000720
000721 TTGGCTTTTT TTTTTTTTTT TTTTGAGACA AGGTATTACT TTTGCCCAGG TTGGTAGAGT GTCCTGGCGC AGTCTTGGCT 000800
000801 CACCACAGCT TCAAACTACT GGGCTCAAAT GATCTTCTCG CCTCAGCCTC CCAAGTAGCT GGGACTACGG GTGTGTGCCA 000880
000881 TCACACCCAA CTAATTATTA TATTTATTTA TATTTTGCAG AGATGAGGTC TCACTTTGTT TCCCAGGCTG GTCTCAAACT 000960
000961 CCTGGCCTCA ACTGATCCTC CCACCCCTCC TGAGTAGTCA GGTCTACAGG CACATGCCAC CATGCCCAGC TAATTGTTTT 001040
001041 GTTTTTTATT GAGATGAGGT CTTGCTATGT TACTTAGGCT GATCTCAAAC TCCTGGGCTC AAACAATCCT TCTGCCTCAG 001120
001121 CTTCCCAAAG TGCTGAGATT ACAGACATGA GTCACTGCAC TCAGCCTACT TGAGGATCTT GAATGCTCAG ATTCCCCAGA 001200
001201 ACTCCCTGGA CCTGCAGAAG TGGCCCAGTC CCCCTTGTTG AAACATAAAA CCCCATTTCC CCCTTCACTC TTGCTTGCTT 001280
001281 GAAAGCTATT CAGTAGCCTC AAAACAAGGC AAGTAACTTC CAGGAGGATG CTGGCCCATC TCAGGATCTG CCCTCTACTA 001360
001361 CCTACCTGGC CACCAGACCC ATAACCCCTC TGGAATCAAG GCTCAAGAGA GAAGTTTAAT GATTTGCCCG GCACTTACAC 001440
001441 AGGTGATGTG TGACAGAGGC GAGGCTGTAA TCCAAAGTGG AACAAGTGAT CAGATTCTTT ACGGGAAGCT GCAGACACTA 001520
001521 AGGCAGTTTT CCTTTCTAAA TAAATCTCTC AGACTTTCAC TGAGTCAATA GAGATGGGAA ACAGGTGATA AACAAGTATC 001600
001601 ATACACTCAG ATTATTAAGT TACTACCCAG TCCATTTTTT TCATTAACCT TCTTTCCCAT ATGTAAGGCT GGCTACATAA 001680
001681 TTTCCAGGAC CCAACGCAAA ATTAAAATGT GGGGCACATT TTTAAAAGCA CAGAGAACTT TGCCTGTGGC AACAGCCATG 001760
001761 GTGAGAGGAG CGTGGCTCTC TCCTCTCCAC CATGGCATGT GCTCGCCTAC TAATA
[back to top]

Predicted Small Protein

Name NONHSAT007576_smProtein_1418:1570
Length 51
Molecular weight 5590.4782
Aromaticity 0.06
Instability index 44.63
Isoelectric point 8.84014892578
Runs 7
Runs residual 0.0246783625731
Runs probability 0.0423827188534
Amino acid sequence MICPALTQVMCDRGEAVIQSGTSDQILYGKLQTLRQFSFLNKSLRLSLSQ
Secondary structure LLLHHHHHHHHLLLEEEEELLLHHHHHHHHHHHHHHHHHHHHHHHLLLLL
PRMN -
PiMo -