NONHSAT007647

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT007647

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1256 nt

Genomic location

chr1+:173638092..173640548

Exon number

2

Exons

173638092..173639171,173640373..173640548

Genome context

Sequence
000001 ACCTGGTCTG CCTTACTAAA TAAGTGTAGA AAAATCTATA AACTTTTCTT TTTAACTATA GAATGTGATT GCTTTCGAGC 000080
000081 CACCcacaat agaaaatcac ataggtcata gcacctaccc cataggctct cacattttgg tagggaagac acaagtaaat 000160
000161 cagcaatgac agagtgagat cagggattca atggaggtag gtagagtgct ttgaaagtaa aaccgtggac atctacattc 000240
000241 aattctgggt ggcggtctca gaaagttttc ccagaagagg tgaaacctcg atagtgaaga gtaggagtct taaaaggagg 000320
000321 aaaaaaggac aatccaggta acgggaagag cataaacaaa gggcaaggag gcaggcgacg cagcctgaag ttgtgataga 000400
000401 ggagtagATC CTAATGTGCC TTTTAAGCCA ACTGATTTTT TTCTTCAAAA AAAAAAAAAA AGTAGTCGCT TAATCAAGTC 000480
000481 CCAGCTCAAG GAGAAGGACC CCAAGGGCAA CCCTGGGCAC ACAGAGTTAA ACAAAGAGAA GGCCTGAGGA ACAGGATACA 000560
000561 GAAAGTGGCA GCGCCGCCAG GTGATCCAGG AGGTCCCGCG AGGGGGCAAC GGACACTTCA GGGCACCAGA GTTTGCTCTT 000640
000641 CGGCCTGAAT TCCCTAGGGA CCTTCTGCGA TCCCTTGCGG CTGCCGGCGG GGTAGGAGAC CGGTGCGCAA AGCTCTGGAC 000720
000721 AGAAGCAGTG TGAGGACGCT GAGATTGAAG CCCACTCCCC TCCAGCCCTG CCCGAGCAGC CTGGAGGGAA GATGTCCGTC 000800
000801 TACCCCATCG CACTCCTCCC CAAGTGCCCA CCCCGGCCCA CAGCGCCAGG ACCCCTAGAC TCACCACACC CGGGCCCCGG 000880
000881 CCTCCTCGGT TACCATAGCA ACGGCGCAAC ACGCGAGGCA GCGCCTCCTC CTGCGCCGCG GTTCCGGCAG CGCGGGAAGG 000960
000961 TTATTCTTGG TTGCAAAGGC GCAGGAAGCC AGAGTGGAAA ACAGCCAGGA ATTATCTATA ATTTCAGTCT CTGGGTGGCG 001040
001041 TGTCGGTTTT TTCTTTGTTT TGTAAATTTT CTGTAATAAG atgtctgtag catgcggctt gtcacatctg caagggagct 001120
001121 gcctggattt gccggggcct gttttctgaa aaatggacca cttaaaaagt acttcttaca ggtgagtggg ctcaaggata 001200
001201 cacattaaga gtcaaaatgg tggagtttaa ctggtatatg accttcttgg gtacat
[back to top]

Predicted Small Protein

Name NONHSAT007647_smProtein_791:1075
Length 95
Molecular weight 10060.6939
Aromaticity 0.106382978723
Instability index 50.4436170213
Isoelectric point 9.96063232422
Runs 12
Runs residual 0.00115633672525
Runs probability 0.0515368309487
Amino acid sequence MSVYPIALLPKCPPRPTAPGPLDSPHPGPGLLGYHSNGATREAAPPPAPRFRQRGKVILG
CKGAGSQSGKQPGIIYNFSLWVACRFFLCFVNFL
Secondary structure LLEEEELLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLEEEEE
ELLLLLLLLLLLEEEEELLHHHHHEEEEEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
PiMo i???????????????????????????????????????????????????????????
??????????????????????????????????