NONHSAT008391
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008391 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1226 nt |
Genomic location |
chr1-:184614119..184633736 |
Exon number |
2 |
Exons |
184614119..184614158,184632551..184633736 |
Genome context |
|
Sequence |
000001 TGCTTCCTTT TTAGTCCTGC GCATGTGGGC AGAGTACAAG CTAATTGGCA GGGCTGTTCC AAATCCTAAA GAACGCGCGC 000080
000081 GCTGCCTGCT CGCCAGCGGG AGGGCCGTGT GCCCAGCTTG CGCCCTGACA TTTTCCGAGG CCTGGGCGAG GCCACCTGCC 000160 000161 TGACGAAGGC TTACCAGGGA AAATCAGGTC CTGACAGCCT GACAGGGACA ACCGCCCAGA GGATTCATCT GCTCGCGATG 000240 000241 CCTGGTCAGC AAGGAGGAGA CTCGACCTGG GACGAGGAAG AGGCCTTGAA GGGACAGAGG AGAGCGCATC CTCCATCCCC 000320 000321 CGGCCAGGGA GAAGTCACGC GGACCCCCAG GTTGCTGGGC CGCGATGGGG GGAAGAGGAG ACCACCCCCA GCTCCGCAGC 000400 000401 GAGCGCCCTC ACTTCGGGGA GACAGAGGCG TCGATCCCTC CTGCGGACGG CTGGGGGCGC TGCGCTTCAA CCGAAGGCAG 000480 000481 AGATCCTGGA CCGGGGCGAG GCAAGCCCTC CCGGAGGAGA GGAGCTCTGA AGGGGGAAAA CAGCTCTGCA GAGTGTAGAG 000560 000561 GAGCCGGACT TTGCAGCCAG GTACCTCTGT GCAAGTCTCA GCTGTGCCTC TGAAGTAGCT AGCCGTtgcc cagcactgtg 000640 000641 ctaaggtctt ttcatcactg tgtaattgaa ggctcacagc caccctttaa ggaaaacgat cttgtcgtca ttattttata 000720 000721 agaaatggaa tggaagctca gtgccacccc tagcccatgg acacattccc agagagcggc agtgtgtctg gcctggaact 000800 000801 taatgaattc tgtcggacag aagtccatgc tcttaaccat taggcCTCCC ATACAAAGAT ACTTTGTACG GGGACATGAG 000880 000881 ACACAGCCTA ATAGCACAGA AACTCACAGA GGACGAGTTT cttagttttg tcatctctga aatgggaata ataatattac 000960 000961 tcccaccttg caaggctttg ggaaagatta gagagaatgt aAAAAGGTCC ATGTGAGAGG TCCTCGTGGG TTAATGTGTG 001040 001041 GGGGGAGTCC CCAGTCCCTC CCCGGGCACT CAGAGCGATG TGGGAAGACT GTGGAGCCCA TGCTTATTGA TGCTGTTTCA 001120 001121 TTTCAATTAA ACCTCCGTCA GAAACATCGC ATGACATCAA AATGGAAGAG ATGTTGAGTC TGAACGGTGC TGCCTCCGCA 001200 001201 ACCCAGGATC CTACCAGCTG CAGAAG |
Predicted Small Protein
Name | NONHSAT008391_smProtein_875:1015 |
Length | 47 |
Molecular weight | 5257.3097 |
Aromaticity | 0.0434782608696 |
Instability index | 44.4434782609 |
Isoelectric point | 9.10028076172 |
Runs | 9 |
Runs residual | 0.0342908902692 |
Runs probability | 0.0423855227777 |
Amino acid sequence | MRHSLIAQKLTEDEFLSFVISEMGIIILLPPCKALGKIRENVKRSM |
Secondary structure | LLHHHHHHHLLHHHHHHHHHHHLLEEEELLLLHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |