NONHSAT008513
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008513 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5059 nt |
Genomic location |
chr1-:190844364..190946427 |
Exon number |
4 |
Exons |
190844364..190848977,190851006..190851215,190945550..190945655,190946299..190946427 |
Genome context |
|
Sequence |
000001 cagagatatg aaataatcaa tgcaattgtt taagaagatc atctgacagt ggtgtacaga tatattggag taaaataaca 000080
000081 cacaccagtg agatgaggtg ggaagcaaga acaattgtcc ccatgagagA CAAATGCATT AACAGTGGAA GCTGCTGAAA 000160 000161 AGATTTTCCA TTCATGGATT TTAATGAGAA AGGATGAAAA ATCAAAGTAG TTTTAAGGAT TAAGCAAAGG ATTGGaaaac 000240 000241 agaacgaaga gaacactttc cagctcattt tctggagcca gtattactct aataaagcaa aggcattaca aaaataccaa 000320 000321 aacctctaga ctcgtaactc atgatcaaag atacaaaaat catccacaaa atatgaccac ctgaaactag tagtataata 000400 000401 atgataataa atcatgataa atggagctta tccaggaact gtctggagtc tattcaaaat gccacattac atttggatgc 000480 000481 catgtctcct taggttcctg tgggctgtgt caatttctgt gacatttttg atgatgttga cactttggaa gactattggt 000560 000561 aaagtacttt gtcgtatgca cctttatcct ctaatggaat ttaaatttat ctaatgttta tctcatgatt agactgaggt 000640 000641 tatctgtttt agggacacag gtcacagaga tgaggtgtca tttttatcac atcacataaa ggaaacacta tcaagtgatt 000720 000721 aatgactgtt gatgtggacc tcgattccct ggcagagcgg gagtttgcca ggtttctcca ctctaaactt actcttctcc 000800 000801 actctcttac tatactagac tctggaagga agacattaca tgtatcacac acttaagaaa tggggactaa tactccctct 000880 000881 ccttggtaat ggagaatcta caaaaatcat ttggaaatat tcttcatggg agatttgtct catctcttct tcttatatat 000960 000961 ttatttgttc ttataattat ttatttatat catgatgttc tcatcaacat atattttgta ttttgtatta cattaataca 001040 001041 actttcattt tcttgctcaa attgtttcag gattggccat tgagaggtct ttcagttggc tcttgtgttc tgtcgatata 001120 001121 tctccatagg cattttttgt ttgtttgttt ttgcttttgg acacctcctc attttccagc atgacaagat gagctgtgtt 001200 001201 catcttgtgt atttctaggc ccatctctag aatgagccat ttatccaaag agctttggtt tcttttattg gaatatatta 001280 001281 gaaaacaaga tctggatgca aactgtgcaa gttctactgg ggtgtcattt cttttaggac ctcttagcac ctttcaaata 001360 001361 tatgtctata tatttgtctt tatatattta catataaata aacatttcca tatttgacaa tctatatcta tattacacta 001440 001441 atagcctgag atcttcacct ctatgtttta ttgattgatg tgtcttactg atttttccaa acctcatcta tcactatata 001520 001521 aattattctg gcctcttgcc cttactttta cataaatact cacttcaaca aatagaaact tcactctcat gatttaccat 001600 001601 ctatttactt tattgttcaa ttccagtgta cgtgtataga agtatcaaga ttgtccacca gtatcccaat gggaaaaact 001680 001681 tcattagccg gtatagtgct tttgtgatgt ttctttcgcc tttagactta catacatctc tcatttccaa aattacttag 001760 001761 ttcatcagct acccaccccc ctcgcccacc ttctcactga ggttgtttca tgtatttata aatagcatta cattctattg 001840 001841 tcaaagtctg cattgcttcc taggattctc caatctccta aatgatattt ttgtttgcat acattaaggc tcacgctgtg 001920 001921 ctataagttt atggatttaa acaactggat aatgtcatgt tttccaccat gacagtatca tatagaataa tttccctccc 002000 002001 ctacatattc cctgttattc acctgttcat ccctgtcctt gtcccccaac atctcaacct accactgcta ttttcactct 002080 002081 ctctagttct gcctttttca aagtatcatc taatgggaat gatacagtat ttaccctttt ctgactgcca tctttcattc 002160 002161 atcaatatgc attttaggtt tacccggttt ttgttgcttg atagtacatg ttttattgct aaataatatt ctattgtata 002240 002241 gatttatcac aggatttaaa aatttattca cctattgaag actgtttcag ttgcgtctag ttttgcaatt atgaataaag 002320 002321 ctgttaaaaa cttttcttgc aggtttttat gaggacataa gtattaaaat caattgcata aatgcttaga aacaagattg 002400 002401 ttatggctat atttggcttt ctaacacact aaaaaaaagt ctttcattct ggctgtacaa ttttgcattt tctttatgag 002480 002481 ggaatgaaaa cttctgttgc ttccaaccct ctccagcatt cgattttcca gattttatgg cttttagtca ttcaaataca 002560 002561 tgtacagtgg taatttcttg ttgttttaat ttgaaattat ttaatgacaa ataatgctga atatcttctt acatgcttgt 002640 002641 ttgtcattta cataaatttg gtgtggattc ttttcagatc ttgcccattt ttaattgaat cacgttatta ttgagattta 002720 002721 aatatttctg tgaatttgga tacaatcact tatcagatag atgttaagca aatattttct ttagtctgtg gcttctcttt 002800 002801 tgattcgctt cactatgtct ttacagaacc aaagaactta cttttaatac agttcagttc atcaattttt aatagattgt 002880 002881 tcttttgatg ttgtattaat atctaaaaac acaccacaaa cacagagtca cataaatttt cttctatgtt ttcctctgct 002960 002961 agttttatag tgctgtttta tatttgggta tatgaactat tttgagttac tttttgtgaa aggtgtaagg tttgtgccta 003040 003041 cattcatttt ttttaatatg aacatccaat ctttttagta ccatttgttg taaagactat actttatcct aaagactata 003120 003121 ctttatccta aagactatac tttatccatt gaactgcctt tgctcttttt tcaatgatta gttaactata tttttgtaga 003200 003201 tctatttctg ggttctctat tcttttccac tcatttatat aaccttttga taaatatatc aataacatgg tgtacagatt 003280 003281 ataatagctt aattataacc aaaccatgca tttggttata tcagtcctct tacttttctc ttcttcagta ttgtgcagaa 003360 003361 aattttaggg tgttcttttg tttccatata aaccttccag ttaatttgtt gatacaaaaa agcttgttgg aactgctgct 003440 003441 atgattgttt tgaatatatg aatcaagttg gaaagaactg acattttaac actattgagt tctccagtct atgaacatga 003520 003521 aatctctctc cattaattga gtttttttcc tgatgtctct caccagagtt ttgtagtttc ccgtgtggat tttttttact 003600 003601 cattttatta tattcatact aaatatttca ttttggtgtt atcataaatc acattttgtt tttaatatca aacctaaatt 003680 003681 atttattgct ggtatataag acagcaactg acttttgtat agtaatcttg tatcctatga ccttgctgct gatcagctct 003760 003761 tggatttttt tttcccagtt atttgcaatt ttctacttag taaaatcata tcgtctgcaa ataaaggtag ttttactcct 003840 003841 tcctttacaa tctcgtactt tctgttttat tttgccttaa aataactagg actttcaatc aggggatatt aagagtgatg 003920 003921 agagagggta tccttaccGt tagtctgaga tatggtggat tacattggcc atttttcata tgttgaagca gcattggata 004000 004001 cttggaataa attccacttt gtcatggtgt atcattcatt ttcatacatt gttaaatttg atttgctaat attttgttaa 004080 004081 ggatttttga atctatgttg tttatgaaag atattgtctg tcattttctt ttttaaaatc atgttcccag cactttggga 004160 004161 ggccgaggta ggcagatcat ttgagatcag gtgttcaaga ccagcctggc caacatagag taaccctgtc cctactaaaa 004240 004241 aatgcaaaaa tcagctgggc atggtggtgt gcacctataa taccagctac ttgggaggct gaggcaggag aatcatggaa 004320 004321 gttgcagtga ggcggatgtt gcaatgagcc gagatcttgc cactgcactc cagcctgggc cacagaaaga gactccgtct 004400 004401 caaaaaaaca aataaacaaa aaacccaaaa acccctgtgt ttacctgatt ttagtattag agtagtgctg gcctaataaa 004480 004481 ataagttaga aattgttcct catatattct ggacgatatt gtgaagtatt ggtataattt cttccataaa tgtttggcat 004560 004561 aatttaatag caaaagtatt tagactgagc actttctttt tggcaaggta ttaattattg aatctattta atatgtgttg 004640 004641 acttaatcag tttatcgatt ttgcatggtg tgagttttag tagtttgtgt ctttcaagta attggtccac ttaatccaag 004720 004721 atattaaatt tgtgggcata aaAggactga attatcagcc cccatgccca gccaaatatg tgtgttgtag tcctaatcca 004800 004801 tagtatctag aatgaaatgt atttgtagtt aaggtcttta aatagttgat taagatagtg tgaattttaa tctatatgac 004880 004881 tggtgtcctt ctaagaagaa taaatgtgaa caaacgaaga aataccagga atgagcttgc atagaggaaa aaccatgtga 004960 004961 agacacagca aaatgggaac aattcacaag ccaaggagaa agttttcaga agaaaccaaa cctgccaaca tctcagtctt 005040 005041 gtacttctag cttccgaga |
Predicted Small Protein
Name | NONHSAT008513_smProtein_413:613 |
Length | 67 |
Molecular weight | 7916.7631 |
Aromaticity | 0.181818181818 |
Instability index | 48.5287878788 |
Isoelectric point | 9.69720458984 |
Runs | 8 |
Runs residual | 0.0293957539467 |
Runs probability | 0.0445813460519 |
Amino acid sequence | MINGAYPGTVWSLFKMPHYIWMPCLLRFLWAVSISVTFLMMLTLWKTIGKVLCRMHLYPL MEFKFI |
Secondary structure | LLLLLLLLLHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLHH HHEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHH HHHHHH |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTT TTTTTT |