NONHSAT009920
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009920 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1972 nt |
Genomic location |
chr1+:227581292..227618736 |
Exon number |
4 |
Exons |
227581292..227581405,227583220..227583315,227597456..227597585,227617106..227618736 |
Genome context |
|
Sequence |
000001 GTCTTTAAAA GAAGAGGGAA ATATGGACAC AGACATAGAC ACAGAGGAAG ATGATGTGAA GACACACAGG GAAAACATCA 000080
000081 TGTAAAGACA GGCTTGGAGT GGTGCACCTA CAAGCCAACA CAGAATCACA GCATCTCAGA GTTGGAAGGA ATTCTTCATA 000160 000161 TGACCACATT GATTTTTTTT TTCCTGTTGG TCGGCATCAG ATTTGTGAAG GCCCCTGGAA GATTGGATGG TGCCTGCCTA 000240 000241 TACGGAGGGC GGATCTTCCC CTCCTCGTCC ACTCAGACTC ACATGCAAGT CTCCTCTAGA AACACCCTTG CAGACACACC 000320 000321 CCAAAATGAC ACTTTTAGAG CCCCTAGAAG ATGCCTTAGA GATGAAAAAA AAAACACACG CATTTCCTAA TGAAGAGGCA 000400 000401 GCCAGATGCA GCCTCTGAGC CCTGACTGCA CAGTGTGACA GTCACTCAAC CCAACACAGC TCTCTTGCCT TTGCTGCAAC 000480 000481 CTCAACACCC TGCGTCCTGC CAAATCTCTT CCCATTTCAT CAGTCCATCT ATGCTGGTGT CCAGCCATTC CAGCCCACCA 000560 000561 TGGCATTTAA AAATCTTTCC AGCTCTCTGT GGAAGATCTG AGACTTGAGA AAGAGACTGT TGCTCAGGGC TGGACAGGAA 000640 000641 GGAAGTATGC ATTCCTGGCT CCCAGAACAG AACAGCAATG TGGGTGACCC TTCGTCCCCT CCCCAAGGCG TCCCCTTGGG 000720 000721 CCGACACAAA AATAGATTCT ATCCTCCTTG GTTCGTCTCC ACCTCCCTCG GGAAAGAAGA CACAGGCTTC GAGTGAGTCA 000800 000801 ACAGTATTAT CGGGGCTTGA CTGTCTTTCA GGAATGACCA GATGTTGGGA AGAGGATAAT GTGCCATTTC CTTTAACAAA 000880 000881 TAGTCCGGGC ATCTGTGCAT TTCCTTTTGA GCCAGCTCTT CAGGAGACTG TGCCGCTGTG ACAGGGAAGG ACGAATCACC 000960 000961 CTGGTTTCTA CTCTCACGGA TACTAGGGGG CTCCTCGAAC CCTTTGGATT CCAGCCCTCC ATTAAGAAAA TATTTCTGTC 001040 001041 CTTTGTATGC ATGAGTGGCA CCACGAGAAG ACAGCATAGG GAGTGGTTAC AAGCAAAGAA TTTAGAGACA AAATAAATGC 001120 001121 TCTAAGGGAA AAAGACAAGT AGCCAAGGAA CGCTGGGAGA GGGCTTGGAG GAAGCAAATT GTTCATCCAT TCCCCCAAAT 001200 001201 CAGTGGTTCT CAGTAGAAAA CCAACATGAG TAACATTTGC CTGGGAACTT GTCTACCACC CCAGCCCTAC TGAAACTCCA 001280 001281 GGGGTGAAGC CCAGCAATCT CCTTTGACAA GCCTTCCAGG AGATTCTGAT GTGAGCTCAA GATTGAGAAC TACTGATCCA 001360 001361 GATAGATCTT AGCTGGTCCT GGGGCTTCCC AGAAAGCATT TTTAAAAAAG CAGAGATTCT CCTCCACAGG AGGCCTACAT 001440 001441 GCTGCCACCT CTGTGGCCAC CATGTCTCTA GTGATCCCTG AAGAGTTCCA GCATATTCTG CGAGTACTCA ACACCAGCAT 001520 001521 CGGTGGGCGG TGGAAAAAAA GCCTTTGCCA TCACTGCCAT TTAGGCTGTG GGTCGAAGAT ATGCTCATGC GGTGTTGAGG 001600 001601 AAAGCAGACT TTGACCACAC CAAGAGGGCA GGAGAACTCA CTGAGGATGA GGTGCAACGT GTGATCACCA TTATACAGGA 001680 001681 TCCATGCCAG TACAAGATCC CGGACTGGTT CTTGAACAGA CAGAAGGATG TAAAGTCTGG AAAATACAGC CAGATCCCAG 001760 001761 CCAATGGACA ACAAGTTCTG TGACGACCTG GAGTGATTGA AGAAGTTTCA GGCCCATAGA GGGCTGCGCC ACCTCTGGGG 001840 001841 CCTTCGTGTC TTGAGGCCAG CACAGCAAGA CCACTGGCTG CCATGGCTGT ACTACGGGTG TGTCCAAGAA GGAATAAGTC 001920 001921 TGTAGGCCTT GTCTGTTAAT AAATAGTTTA TATACCAAAA AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT009920_smProtein_677:940 |
Length | 88 |
Molecular weight | 9344.6097 |
Aromaticity | 0.0689655172414 |
Instability index | 73.6034482759 |
Isoelectric point | 4.60650634766 |
Runs | 15 |
Runs residual | 0.0341543513957 |
Runs probability | 0.026055467232 |
Amino acid sequence | MWVTLRPLPKASPWADTKIDSILLGSSPPPSGKKTQASSESTVLSGLDCLSGMTRCWEED NVPFPLTNSPGICAFPFEPALQETVPL |
Secondary structure | LEEEELLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLEEEELHHHLLLLLEEELLL LLLLLLLLLLLEEELLLLHHHHHLLLL |
PRMN | - |
PiMo | - |